- Basic information
- CohesinDB ID: CDBP00419122
- Locus: chr21-38242575-38246729
-
Data sourse: ENCSR000BTQ, ENCSR000EFJ, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE72082, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE85526, GSE135093, GSE206145-NatGen2015, GSE68388, GSE73207, ENCSR703TNG, GSE126755, GSE165895
-
Cell type: MCF-7, RPE, Fibroblast, HEKn, TF-1, GM12878, IMR-90, SK-N-SH, Neutrophil, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 43%,
"7_Enh": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, PAX3-FOXO1, GATA6, RUNX2, ZFX, EZH2, MCM3, HIF1A, BRD4, ZSCAN5A, E2F1, PRDM9, ZNF334, CTCF, SPI1, MITF, AHR, YY1
- Target gene symbol (double-evidenced CRMs): VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000157538,
- Related loop:
chr21:17775000-17800000~~chr21:38225000-38250000,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25450000-25475000~~chr21:38225000-38250000,
chr21:31275000-31300000~~chr21:38250000-38275000,
chr21:36075000-36100000~~chr21:38250000-38275000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38250000-38275000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38250000-38275000,
chr21:37325000-37350000~~chr21:38225000-38250000,
chr21:38125000-38150000~~chr21:38250000-38275000,
chr21:38150000-38175000~~chr21:38250000-38275000,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38350000-38375000,
chr21:38225000-38250000~~chr21:42225000-42250000,
chr21:38250000-38275000~~chr21:38750000-38775000,