- Basic information
- CohesinDB ID: CDBP00419123
- Locus: chr21-38247012-38247257
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF621, XBP1, FOXA1, SUZ12, HDGF, BMI1, NFIC, ATF3, RUNX3, PRDM1, PAX5, HDAC3, MAF, ELF1, TRIM28, BCLAF1, KLF6, TEAD1, ZNF217, ESR1, HNF1B, ZIK1, CTCF, TCF12, BAF155, E4F1, EP300, MNT, GATA6, DPF2, PAX8, IRF4, RAD51, ZNF512B, ZNF776, FOXA3, PDX1, EED, YBX1, GLIS1, POU2F2, ZNF239, POU5F1, TOP2A, MTA2, ZBTB17, SAP130, NBN, ARID3A, HNF4G, ERG, MYC, ONECUT1, RAD21, RXRA, BATF3, GABPA, XRCC5, ZNF398, IKZF1, NR3C1, EZH2, GRHL2, HES1, SPI1, IRF1, HDAC2, GATA2, GATAD2B, SIX2, SMARCA5, RELB, RUNX1, SMC1A, CEBPA, SIN3A, ZFX, AFF4, ZNF770, ERG3, TRIM22, GATA4, ARNT, BACH1, ATF2, PRDM9, MED1, ZEB1, MYB, PIAS1, STAT5A, BCL11A, SP1, NIPBL, HNF4A, REST, ATF7, FOXP1, NCOR2, MLLT1, NFATC3, MEF2B, PPARG, FOXA2, MTA3, EBF1, CREM, NFATC1, ZNF662, ZBTB33, HOXB13, BCL3, YY1, RELA, TARDBP, ZNF148, JUNB, ZNF521, SKIL, ZNF311, GATA3, BATF, TAL1, MAX, ZSCAN26, GATA1, ZNF143, TLE3, KLF4, ZNF592, NCOA3, NR2F2, ZNF544, NR2F1, TCF7L2, ZNF687, PKNOX1, ZNF334, BCL6B, PHOX2B, ELF3, TBX21, BHLHE40, AR, ZNF366, EGR1, IKZF2, BRD4, JUND, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157538,
- Related loop:
chr21:17775000-17800000~~chr21:38225000-38250000,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25450000-25475000~~chr21:38225000-38250000,
chr21:31275000-31300000~~chr21:38250000-38275000,
chr21:36075000-36100000~~chr21:38250000-38275000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38250000-38275000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38250000-38275000,
chr21:37325000-37350000~~chr21:38225000-38250000,
chr21:38125000-38150000~~chr21:38250000-38275000,
chr21:38150000-38175000~~chr21:38250000-38275000,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38350000-38375000,
chr21:38225000-38250000~~chr21:42225000-42250000,
chr21:38250000-38275000~~chr21:38750000-38775000,