- Basic information
- CohesinDB ID: CDBP00419136
- Locus: chr21-38280103-38280841
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE98367
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Cell type: RPE, Fibroblast, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,NIPBL,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 55%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, ZNF660, E2F7, MEIS2, HNF1A, XBP1, FOXA1, PBX2, MLL4, TFAP4, LYL1, ZNF90, ATF3, NFIC, INSM2, CHD7, KLF14, ZNF189, SMARCE1, MECOM, TP63, PAX5, MITF, ZNF629, JMJD1C, TEAD1, TRIM28, ELF1, KLF6, ETV1, NFE2L2, SNAI2, LMO2, HNF1B, TP73, USF2, CTCF, TCF12, JUN, EP300, E4F1, MNT, DPF2, E2F6, SIX5, TRIM24, IRF4, RFX5, SOX6, E2F1, ZNF528, SMC1, TEAD4, KMT2B, GTF2F1, PDX1, EHMT2, POU2F2, ZNF263, BRD3, MYCN, SRC, ZSCAN21, MTA2, DUX4, STAT1, NONO, ARID3A, PHB2, TBP, PAX6, ZBTB21, HOXC5, ERG, ETS1, MYC, SMARCA4, TSHZ1, ARID1B, RAD21, LHX2, RXRA, NKX2-1, FOXK2, PROX1, BATF3, GABPA, STAT3, NFE2, RCOR1, ZNF639, NR2F6, VDR, ARNTL, NR3C1, CEBPB, LEF1, ZNF750, KMT2A, CREB1, EZH2, KLF8, ZHX2, SPI1, EHF, IRF1, HDAC2, GATA2, ZNF644, FLI1, MXI1, MRTFB, ZNF554, ATF1, RUNX1, SMC1A, HDAC1, CEBPA, EZH2phosphoT487, SIN3A, AFF4, ZFX, SMAD3, ZMIZ1, SMARCC1, PRDM10, MEF2A, ZBTB2, CREBBP, RUNX2, CDK6, GATA4, OSR2, ZNF184, PBX4, DAXX, NRF1, HMGB2, ZNF518A, HMBOX1, ZEB2, CBFA2T3, PBX3, FOXM1, CHD1, CDK8, FOS, MED1, ZEB1, DIDO1, SPDEF, MYB, PML, CEBPD, VEZF1, SUPT16H, NR1H2, L3MBTL2, STAT5A, KLF16, MAFK, SP1, NIPBL, USF1, NR4A1, BCL11A, REST, ARID1A, ATF7, ZHX1, PHIP, TCF3, SMC3, ELL2, STAG2, ZNF394, SKI, CBFA2T2, PPARG, FOXA2, MTA3, CREM, CBX3, SS18, CHD2, MEIS1, ZNF692, MAFF, ZBTB33, MEF2C, CDK9, BCL3, KDM1A, YY1, RELA, JUNB, BRCA1, OTX2, GATA3, BATF, TAL1, MAX, SPIB, GATA1, KLF4, SP7, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, PKNOX1, MED, ZNF334, NFKB1, MYOD1, BRD2, ELF3, BHLHE40, AR, RBAK, ZNF366, EGR1, MYNN, RNF2, NCOR1, BRD4, JUND, NOTCH3, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): DYRK1A,KCNJ6,KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 0
- Related genes and loops