- Basic information
- CohesinDB ID: CDBP00419143
- Locus: chr21-38314147-38315196
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Data sourse: GSE67783, GSE138405, GSE206145-NatGen2015, ENCSR000EDE, GSE108869, ENCSR000ECS
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Cell type: Hela-Kyoto, HeLa-S3, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 55%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, NME2, HNF1A, FOXA1, ZFHX2, LYL1, ATF3, CHD7, ATF4, ZNF467, JMJD1C, MYOG, KLF5, TRIM28, ETV1, NFE2L2, LMO2, ESR1, MLL, HNF1B, CTCF, JUN, TCF12, EP300, BAF155, KLF1, IRF4, TRIM24, DEK, TEAD4, KMT2B, GLIS1, NANOG, CHD8, POU2F2, BRD3, POU5F1, DUX4, ZSCAN5A, STAT1, MLLT3, ERG, ZBTB21, PBX1, ASCL1, ETS1, MYC, ONECUT1, SMARCA4, RAD21, RXRA, NKX2-1, BATF3, GABPA, STAT3, XRCC5, PRDM14, IKZF1, RCOR1, NFE2, VDR, NR3C1, CEBPB, KMT2A, CREB1, EZH2, ZHX2, SPI1, GATA2, SIX2, FLI1, RUNX1, SMC1A, CEBPA, EZH2phosphoT487, LDB1, ZFX, SMAD3, ZNF513, SMARCC1, ZNF384, RUNX2, ARNT, PBX4, SOX11, ATF2, ZNF10, FOS, CDK8, CHD1, MED1, ZEB1, SPDEF, CEBPD, MYB, TERF1, ZNF41, MAFK, SP1, BCL11A, GSPT2, HNF4A, REST, ARID1A, ATF7, ASH2L, PHIP, TCF3, SMC3, STAG1, CBFA2T2, PPARG, FOXA2, MEIS1, CHD2, MEF2C, ZBTB33, CDK9, HOXB13, KDM1A, YY1, RELA, JUNB, ZIC2, TAL1, MAX, ZNF143, GATA1, CEBPG, SP7, NCOA3, NR2F2, BAP1, TCF7L2, TP53, MED, NFKB1, MYOD1, EGR2, ELF3, ARRB1, AR, ZBTB42, NCOR1, BRD4, JUND, BRCA1
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops