Browse_each

Basic information

CohesinDB ID: CDBP00419148

Locus: chr21-38341496-38342080

Data sourse: GSE206145, GSE67783, GSE86191

Cell type: RPE, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Mau2,SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 76% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 65%, "14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF283, ZFX, XBP1, WT1, RELA, JUNB, MYC, RUNX2, GRHL3, MECOM, STAT3, MAX, XRCC5, TAL1, FOS, MED1, CEBPB, ZEB1, ESR1, ZNF334, NFKB1, CTCF, JUN, AR, TAF1, HSF1, BRD4, MAZ, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): KCNJ6,TTC3

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000182670, ENSG00000157542,

eachgene

Deatailed information for cohesin site CDBP00419148