- Basic information
- CohesinDB ID: CDBP00419149
- Locus: chr21-38342637-38344955
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR501LQA, ENCSR760NPX, ENCSR150EFU, ENCSR000ECS, GSE25021, ENCSR330ELC, GSE108869, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE165895, GSE138405, GSE76893, GSE206145-NatGen2015, ENCSR806UKK, ENCSR703TNG, ENCSR199XBQ, ENCSR895JMI, ENCSR193NSH, ENCSR768DOX, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR807WAC, ENCSR620NWG, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR000HPG, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR537EFT, ENCSR000EDE, GSE68388, GSE126990, ENCSR748MVX
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Cell type: MCF-7, RPE, Fibroblast, Hela-Kyoto, A-549, HeLa-S3, HeLa, IMR-90, RT-112, Liver, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 27% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 49%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, FOSL1, PGR, FOXA1, SMAD1-5, ATF3, ZNF189, SMARCE1, CDX2, ZNF629, TEAD1, ZNF121, ELF1, KLF6, ETV1, TRIM28, ZNF217, ESR1, HNF1B, USF2, JUN, TCF12, CTCF, EP300, BAF155, KLF1, GATA6, DPF2, RFX5, DEK, PRKDC, E2F1, ZNF528, NR5A2, TEAD4, GTF2F1, PDX1, TFAP2C, GLIS1, NANOG, POU2F2, ZNF263, BRD3, ZNF778, CTBP1, ZSCAN21, ZBTB17, ZBTB48, ZNF205, TBP, ERG, ZBTB21, HOXC5, ASCL1, MYC, TSHZ1, RAD21, RXRA, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, RCOR1, TERF2, ZNF639, VDR, NR3C1, CEBPB, ESRRA, CREB1, KLF8, GRHL2, FEZF1, IRF1, HDAC2, GATA2, GATAD2B, NCOA2, ZNF554, RUNX1, CBX1, SMC1A, NKX2-2, SIN3A, ZFX, AFF4, SMAD3, ERG3, ZNF513, SMARCC1, PRDM10, ZNF549, CREBBP, ZXDC, ZNF35, RUNX2, GATA4, OSR2, ZNF184, PBX4, NRF1, ARNT, DAXX, NFIB, HMBOX1, FOXM1, FOS, CHD1, MED1, ZEB1, ZXDB, ZNF331, PIAS1, NCOA1, MAFK, SP1, TFAP2A, NIPBL, HNF4A, SMAD2-3, REST, ZHX1, ASH2L, PHIP, MBD2, FOXP1, SMC3, ELL2, STAG1, FOXA2, CHD2, ZNF600, ZNF692, WT1, FOXF1, ZNF574, ZBTB33, HOXB13, BCL3, YY1, RELA, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, TLE3, KLF4, SP7, NCOA3, NR2F2, NR2F1, TCF7L2, TP53, MYOD1, ELF3, BRD2, BHLHE40, AR, ZBTB42, HSF1, BRD4, JUND, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TTC3,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops
- Related gene:
ENSG00000182670,
ENSG00000157542,
- Related loop:
chr21:36125000-36150000~~chr21:38325000-38350000,
chr21:36625000-36650000~~chr21:38325000-38350000,
chr21:37150000-37175000~~chr21:38325000-38350000,
chr21:37675000-37700000~~chr21:38325000-38350000,
chr21:37700000-37725000~~chr21:38325000-38350000,
chr21:37725000-37750000~~chr21:38325000-38350000,
chr21:37850000-37875000~~chr21:38325000-38350000,
chr21:37900000-37925000~~chr21:38325000-38350000,
chr21:38025000-38050000~~chr21:38325000-38350000,
chr21:38050000-38075000~~chr21:38325000-38350000,
chr21:38150000-38175000~~chr21:38325000-38350000,
chr21:38200000-38225000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38343298-38344481~~chr21:39136825-39139305,