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Basic information

CohesinDB ID: CDBP00419152

Locus: chr21-38365365-38365661

Data sourse: GSE111913, GSE86191

Cell type: RT-112, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 76% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 75%, "14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: EZH2phosphoT487, MYCN, ZFX, XBP1, FOXA1, RELA, ASCL1, NEUROD1, AHR, EZH1, MYC, SMARCA4, OTX2, SMC3, MAX, HAND2, MED1, NCOA3, TRIM28, SCRT2, ESR1, PHOX2B, CTCF, SPI1, PAX3-FOXO1, NOTCH3, BRD4, SCRT1, MAZ, TEAD4, TFAP2C, EED

Target gene symbol (double-evidenced CRMs): HLCS,PSMG1,KCNJ6,TTC3,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000159267, ENSG00000182670, ENSG00000157542, ENSG00000157554, ENSG00000183527,

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Deatailed information for cohesin site CDBP00419152