- Basic information
- CohesinDB ID: CDBP00419158
- Locus: chr21-38387044-38387525
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Data sourse: GSE67783, GSE86191, GSE111913, ENCSR000BLY, GSE206145, GSE68388
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Cell type: RPE, HCT-116, SK-N-SH, RT-112, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 35%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SOX2, MEIS2, XBP1, FOXA1, LEO1, PBX2, TFAP4, LYL1, ATF3, NFIC, ZFP64, PRDM1, ATF4, CBFB, MECOM, SMARCE1, MITF, CDX2, JMJD1C, MAF, ZNF629, TRIM28, ETV1, SNAI2, LMO2, ESR1, CTCF, TCF12, JUN, EP300, ARID5B, BAF155, LMO1, ZBTB20, TRIM24, ZNF350, SMC1, TEAD4, KMT2B, TFAP2C, RBPJ, NANOG, CHD8, ZSCAN5D, MYCN, CDK7, RUNX1T1, TOP2A, CTBP1, ZNF317, ZBTB17, ZBTB48, DUX4, STAT1, ERG, ZBTB21, PBX1, ASCL1, ETS1, MYC, SMARCA4, RAD21, PROX1, GABPA, APC, STAT3, NKX3-1, IKZF1, NFE2, RCOR1, NR3C1, CEBPB, KMT2A, EZH2, KLF8, EBF3, SPI1, HDAC2, GATA2, INTS13, FLI1, NCOA2, RUNX1, SMC1A, CEBPA, SIN3A, ZFX, SMAD3, RARA, CREBBP, NOTCH1, ZNF384, RUNX2, PBX4, ARNT, SOX11, ATF2, HMGB2, ZNF518A, PBX3, FOS, CDK8, SUPT5H, MED1, ZEB1, CEBPD, MYB, ZMYM3, PIAS1, EVI1, USF1, BCL11A, NR4A1, REST, ARID1A, RBM25, ATF7, POU2F3, ASH2L, TCF3, FOXP1, SMC3, MLLT1, STAG1, SKI, PPARG, TBL1X, FOXA2, EBF1, MEIS1, SS18, ZNF692, WT1, ESR2, FOXF1, MEF2C, CDK9, HOXB13, KDM1A, YY1, RELA, ZNF19, JUNB, ISL1, SP140, TCF4, HIF1A, ZFP36, GATA3, TAL1, MAX, ZNF143, GATA1, HAND2, PLAG1, TLE3, ZFP69B, BCL11B, CEBPG, NCOA3, NR2F2, ZNF768, MYOD1, PHOX2B, BRD2, TBX21, AR, ZBTB16, ZNF366, MAML3, HSF1, NCOR1, NOTCH3, BRD4, JUND, CUX1, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): PSMG1,B3GALT5,KCNJ6,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000183527,
ENSG00000183778,
- Related loop:
chr21:37725000-37750000~~chr21:38375000-38400000,
chr21:38050000-38075000~~chr21:38375000-38400000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38525000-38550000,
chr21:38375000-38400000~~chr21:38575000-38600000,
chr21:38375000-38400000~~chr21:38625000-38650000,
chr21:38375000-38400000~~chr21:38650000-38675000,
chr21:38375000-38400000~~chr21:38675000-38700000,
chr21:38375000-38400000~~chr21:38700000-38725000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39150000-39175000,
chr21:38375000-38400000~~chr21:39600000-39625000,
chr21:38388533-38390282~~chr21:39174059-39176516,