- Basic information
- CohesinDB ID: CDBP00419163
- Locus: chr21-38403268-38403875
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 37%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, CBFA2T2, PPARG, ZSCAN5D, EZH2phosphoT487, MYCN, POU5F1, KDM4C, ZFX, POU4F2, TOP2A, ZNF263, WT1, ZSCAN5A, XBP1, FOXA1, CBX8, SUZ12, LEO1, CDK9, HOXB13, ERG, YY1, RELA, ZNF384, ASCL1, NEUROD1, ETS1, MYC, CDK6, SMARCA4, JUNB, NFIC, ARNT, HIF1A, NFIB, GRHL3, OTX2, GATA3, GABPA, TAL1, STAT3, TP63, FOS, MITF, RCOR1, HAND2, PLAG1, ZNF750, MYB, KMT2A, SNAI2, TFAP2C, EZH2, LMO2, ESR1, ZNF334, USF2, NFKB1, PHOX2B, CTCF, JUN, USF1, BCL11A, SPI1, ELF3, GATA2, ZNF479, IRF4, SREBF1, ASH2L, RAD51, RNF2, BRD4, SCRT1, MAZ, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 847
- Number of somatic mutations (non-coding): 26
- Related genes and loops
- Related gene:
ENSG00000157554,
- Related loop:
chr21:37725000-37750000~~chr21:38375000-38400000,
chr21:38050000-38075000~~chr21:38375000-38400000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38525000-38550000,
chr21:38375000-38400000~~chr21:38575000-38600000,
chr21:38375000-38400000~~chr21:38625000-38650000,
chr21:38375000-38400000~~chr21:38650000-38675000,
chr21:38375000-38400000~~chr21:38675000-38700000,
chr21:38375000-38400000~~chr21:38700000-38725000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39150000-39175000,
chr21:38375000-38400000~~chr21:39600000-39625000,
chr21:38400000-38425000~~chr21:38575000-38600000,