- Basic information
- CohesinDB ID: CDBP00419174
- Locus: chr21-38426642-38427303
-
Data sourse: GSE206145, GSE67783
-
Cell type: RPE, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
76% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, EZH2phosphoT487, MYCN, ZNF778, ZFX, XBP1, ZBTB48, STAT1, FOXA1, LEO1, ERG, RELA, ZNF384, EOMES, SP140, ARNT, MAX, GATA1, ZNF143, MITF, CDX2, NR3C1, NCOA3, TEAD1, SNAI2, TP53, JUN, BCL11A, AR, GATA6, PAX3-FOXO1, ZNF182, E2F1, AHR
- Target gene symbol (double-evidenced CRMs): ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops