- Basic information
- CohesinDB ID: CDBP00419201
- Locus: chr21-38498193-38500425
-
Data sourse: GSE138405, GSE111913, GSE101921, GSE94872, GSE73207
-
Cell type: Hela-Kyoto, TF-1, HUVEC, HCAEC, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SMC3,Rad21,SA2,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 24%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, FOSL1, TRIM25, PGR, HMG20A, ZSCAN5C, SOX2, MEIS2, XBP1, FOXA1, LEO1, PBX2, MLL4, HNRNPK, MEN1, LYL1, ATF3, NFIC, CTCFL, CHD7, MORC2, CBFB, MECOM, PAX5, TP63, MITF, HDAC3, CDX2, JMJD1C, KLF5, ELF1, TRIM28, ETV1, SNAI2, LMO2, ESR1, MLL, TP73, ZNF561, JUN, TCF12, CTCF, EP300, BAF155, ZNF577, ZBTB20, LMO1, SOX5, GATA6, PAX8, KLF1, ZNF528, SMC1, TEAD4, FOXA3, PDX1, TFAP2C, RBPJ, EED, GLIS1, POU2F2, CHD8, NANOG, ZSCAN5D, POU5F1, ZNF263, RUNX1T1, TOP2A, BRD3, MYCN, ERF, CTBP1, DUX4, ZBTB48, STAT1, MLLT3, SRF, DDX5, ERG2, HOXC5, ERG, PBX1, ASCL1, OGG1, ETS1, MYC, ARID1B, RAD21, GRHL3, RXRA, NKX2-1, PROX1, GABPA, STAT3, UBN1, NKX3-1, IKZF1, RCOR1, NFE2, VDR, NR3C1, CEBPB, ZNF750, KMT2A, CREB1, EZH2, CBX1, GRHL2, BMPR1A, ZHX2, SPI1, EHF, IRF1, PCBP1, HDAC2, GATA2, ZNF182, MXD3, FLI1, PTBP1, RUNX1, SMC1A, ZBTB24, CEBPA, LDB1, EZH2phosphoT487, HDAC1, AFF4, ZFX, SOX13, SIN3A, SMAD3, PCBP2, TET2, CBX8, ERG3, SMARCC1, PRDM10, MEF2A, CREBBP, ZNF384, ZNF35, NOTCH1, RUNX2, CDK6, ZNF184, PBX4, DAXX, ARNT, HMGB2, PRDM9, HMBOX1, ZNF48, PBX3, FOXM1, CBFA2T3, SUPT5H, FOS, CDK8, MED1, TEAD3, PML, CEBPD, MYB, TERF1, PIAS1, ZMYM3, ZNF3, C11orf30, MAFG, TBX5, EVI1, STAT5A, KLF16, USF1, NIPBL, BCL11A, TFAP2A, HNF4A, SP1, MAFK, NR4A1, REST, ARID1A, RBM25, ASH2L, AFF1, TCF3, PHIP, FOXP1, BCOR, PRDM6, SMC3, ELL2, NCOR2, STAG1, STAG2, NFATC3, TRP47, CBFA2T2, ZNF316, FOXA2, PPARG, TBL1X, MEIS1, CBX3, EBF1, NFATC1, ZSCAN16, MAFF, WT1, ESR2, FOXF1, MEF2C, CDK9, HOXB13, ZNF318, KDM1A, YY1, RELA, TARDBP, JUNB, SP140, ZIC2, HIF1A, ZFP36, OTX2, GATA3, TAL1, MAX, NRIP1, ZNF143, GATA1, ZNF449, CBX2, TLE3, BCL11B, NCOA3, NR2F2, GFI1B, ZNF512, TCF7L2, KDM5B, TP53, MED, ZNF334, NFKB1, BCL6B, PHOX2B, BRD2, T, AR, ZBTB40, EGLN2, ZNF366, EGR1, HEXIM1, HSF1, NCOR1, RNF2, BRD4, JUND, NOTCH3, CLOCK, MAZ, MEF2D, ZFP42, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): GET1,GET1-SH3BGR,BRWD1,ERG,ETS2,PSMG1
- Function elements
- Human SNPs: Plateletcrit
- Number of somatic mutations (coding): 237
- Number of somatic mutations (non-coding): 27
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38150000-38175000~~chr21:38475000-38500000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38475000-38500000~~chr21:38675000-38700000,
chr21:38475000-38500000~~chr21:38875000-38900000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39150000-39175000,
chr21:38494233-38495488~~chr21:39174059-39176516,
chr21:38498759-38500180~~chr21:39125156-39127107,
chr21:38500000-38525000~~chr21:38625000-38650000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38700000-38725000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38800000-38825000,
chr21:38500000-38525000~~chr21:38850000-38875000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38504651-38506971~~chr21:39137271-39139180,
chr21:38504657-38506967~~chr21:38711299-38713234,
chr21:38504659-38506970~~chr21:38711337-38713456,
chr21:38504659-38506970~~chr21:39135752-39139340,
chr21:38504661-38506972~~chr21:39135752-39139234,
chr21:38504661-38506972~~chr21:39174299-39176494,
chr21:38504682-38506897~~chr21:38711342-38713466,
chr21:38504693-38507356~~chr21:38711365-38713290,
chr21:38504693-38507356~~chr21:39135757-39139176,
chr21:38504693-38507356~~chr21:39174059-39176516,
chr21:38504694-38507025~~chr21:39135761-39139165,
chr21:38504694-38507025~~chr21:39174543-39176122,
chr21:38504699-38507035~~chr21:39136221-39139367,
chr21:38504701-38506502~~chr21:39135777-39139304,
chr21:38504701-38506502~~chr21:39152806-39154190,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504704-38506958~~chr21:39135757-39139157,
chr21:38504708-38507639~~chr21:39135753-39139144,
chr21:38504709-38506958~~chr21:38711358-38713304,
chr21:38504709-38506958~~chr21:39136233-39139143,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504715-38506948~~chr21:39136158-39139240,
chr21:38504715-38507432~~chr21:39137265-39139144,
chr21:38504722-38507046~~chr21:39135777-39139215,
chr21:38504723-38507444~~chr21:39135766-39139156,
chr21:38504725-38506920~~chr21:39136965-39139305,
chr21:38504729-38506966~~chr21:39136708-39139166,
chr21:38504735-38506980~~chr21:39135742-39136980,
chr21:38504738-38506474~~chr21:39137262-39139083,
chr21:38504739-38507562~~chr21:39137207-39139175,
chr21:38504739-38507562~~chr21:39440834-39442538,
chr21:38504745-38506938~~chr21:39136790-39139170,
chr21:38504745-38506938~~chr21:39174194-39176266,
chr21:38504757-38506917~~chr21:38711337-38713109,
chr21:38504783-38506832~~chr21:39135735-39136956,
chr21:38504783-38506832~~chr21:39137550-39139120,
chr21:38504824-38507757~~chr21:39135757-39139204,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38504928-38507061~~chr21:39135759-39139198,
chr21:38504928-38507061~~chr21:39152794-39154209,
chr21:38504928-38507061~~chr21:39174538-39176142,
chr21:38505033-38506464~~chr21:39136191-39139182,
chr21:38505044-38506990~~chr21:38711624-38712942,
chr21:38505044-38506990~~chr21:39135737-39136964,
chr21:38505069-38506955~~chr21:38711492-38712926,
chr21:38505086-38506468~~chr21:39136216-39139158,
chr21:38505090-38506554~~chr21:38711400-38712971,
chr21:38505153-38506875~~chr21:39125458-39126872,
chr21:38505153-38506875~~chr21:39135794-39136979,
chr21:38505153-38506875~~chr21:39137264-39139102,
chr21:38505153-38506875~~chr21:39174680-39176016,
chr21:38505190-38506606~~chr21:39136767-39139174,
chr21:38505221-38506513~~chr21:39137257-39139089,