- Basic information
- CohesinDB ID: CDBP00419202
- Locus: chr21-38501041-38501534
-
Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
-
Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 39%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, CBX2, POU2F2, CHD8, MYCN, ZFX, SP140, XBP1, ESR1, BRD4, ZBTB48, WT1, FOXA1, ARNT, MAZ, JUN, YY1
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,ETS2,PSMG1,ERG,GET1,BRWD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38150000-38175000~~chr21:38475000-38500000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38475000-38500000~~chr21:38675000-38700000,
chr21:38475000-38500000~~chr21:38875000-38900000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39150000-39175000,
chr21:38498759-38500180~~chr21:39125156-39127107,
chr21:38500000-38525000~~chr21:38625000-38650000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38700000-38725000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38800000-38825000,
chr21:38500000-38525000~~chr21:38850000-38875000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38504651-38506971~~chr21:39137271-39139180,
chr21:38504657-38506967~~chr21:38711299-38713234,
chr21:38504659-38506970~~chr21:38711337-38713456,
chr21:38504659-38506970~~chr21:39135752-39139340,
chr21:38504661-38506972~~chr21:39135752-39139234,
chr21:38504661-38506972~~chr21:39174299-39176494,
chr21:38504682-38506897~~chr21:38711342-38713466,
chr21:38504693-38507356~~chr21:38711365-38713290,
chr21:38504693-38507356~~chr21:39135757-39139176,
chr21:38504693-38507356~~chr21:39174059-39176516,
chr21:38504694-38507025~~chr21:39135761-39139165,
chr21:38504694-38507025~~chr21:39174543-39176122,
chr21:38504699-38507035~~chr21:39136221-39139367,
chr21:38504701-38506502~~chr21:39135777-39139304,
chr21:38504701-38506502~~chr21:39152806-39154190,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504704-38506958~~chr21:39135757-39139157,
chr21:38504708-38507639~~chr21:39135753-39139144,
chr21:38504709-38506958~~chr21:38711358-38713304,
chr21:38504709-38506958~~chr21:39136233-39139143,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504715-38506948~~chr21:39136158-39139240,
chr21:38504715-38507432~~chr21:39137265-39139144,
chr21:38504722-38507046~~chr21:39135777-39139215,
chr21:38504723-38507444~~chr21:39135766-39139156,
chr21:38504725-38506920~~chr21:39136965-39139305,
chr21:38504729-38506966~~chr21:39136708-39139166,
chr21:38504735-38506980~~chr21:39135742-39136980,
chr21:38504738-38506474~~chr21:39137262-39139083,
chr21:38504739-38507562~~chr21:39137207-39139175,
chr21:38504739-38507562~~chr21:39440834-39442538,
chr21:38504745-38506938~~chr21:39136790-39139170,
chr21:38504745-38506938~~chr21:39174194-39176266,
chr21:38504757-38506917~~chr21:38711337-38713109,
chr21:38504783-38506832~~chr21:39135735-39136956,
chr21:38504783-38506832~~chr21:39137550-39139120,
chr21:38504824-38507757~~chr21:39135757-39139204,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38504928-38507061~~chr21:39135759-39139198,
chr21:38504928-38507061~~chr21:39152794-39154209,
chr21:38504928-38507061~~chr21:39174538-39176142,
chr21:38505033-38506464~~chr21:39136191-39139182,
chr21:38505044-38506990~~chr21:38711624-38712942,
chr21:38505044-38506990~~chr21:39135737-39136964,
chr21:38505069-38506955~~chr21:38711492-38712926,
chr21:38505086-38506468~~chr21:39136216-39139158,
chr21:38505090-38506554~~chr21:38711400-38712971,
chr21:38505153-38506875~~chr21:39125458-39126872,
chr21:38505153-38506875~~chr21:39135794-39136979,
chr21:38505153-38506875~~chr21:39137264-39139102,
chr21:38505153-38506875~~chr21:39174680-39176016,
chr21:38505190-38506606~~chr21:39136767-39139174,
chr21:38505221-38506513~~chr21:39137257-39139089,