- Basic information
- CohesinDB ID: CDBP00419205
- Locus: chr21-38510943-38512229
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BSB, ENCSR501LQA, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR000BUC, ENCSR000EFJ, ENCSR000BTU, ENCSR000EAC, GSE76893, GSE101921, GSE135093, GSE206145-NatGen2015, ENCSR198ZYJ, GSE130135, ENCSR703TNG, GSE145327, ENCSR895JMI, ENCSR000EEG, ENCSR193NSH, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR807WAC, ENCSR620NWG, ENCSR748MVX, ENCSR767DFK, ENCSR981FDC, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE129526, ENCSR676MJK, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE50893, ENCSR000ECS
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Cell type: MDM, GM2610, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19193, THP-1, GM19099, HUES64, MCF-7, GM12892, HCT-116, HEK293T, Hep-G2, Neurons-H1, A-549, GM19238, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 29% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.578
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, TOP2A, XBP1, DUX4, FOXA1, HOXB13, ZNF549, RELA, ZBTB2, ONECUT1, MYC, RAD21, PRDM1, HIF1A, MED1, TEAD3, TEAD1, TRIM28, KDM5B, ESR1, CTCF, SPI1, EP300, MNT, AR, REST, BRD4, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): GET1,BRWD1,PSMG1,ETS2,ERG,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 84
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38500000-38525000~~chr21:38625000-38650000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38700000-38725000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38800000-38825000,
chr21:38500000-38525000~~chr21:38850000-38875000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38504651-38506971~~chr21:39137271-39139180,
chr21:38504657-38506967~~chr21:38711299-38713234,
chr21:38504659-38506970~~chr21:38711337-38713456,
chr21:38504659-38506970~~chr21:39135752-39139340,
chr21:38504661-38506972~~chr21:39135752-39139234,
chr21:38504661-38506972~~chr21:39174299-39176494,
chr21:38504682-38506897~~chr21:38711342-38713466,
chr21:38504693-38507356~~chr21:38711365-38713290,
chr21:38504693-38507356~~chr21:39135757-39139176,
chr21:38504693-38507356~~chr21:39174059-39176516,
chr21:38504694-38507025~~chr21:39135761-39139165,
chr21:38504694-38507025~~chr21:39174543-39176122,
chr21:38504699-38507035~~chr21:39136221-39139367,
chr21:38504701-38506502~~chr21:39135777-39139304,
chr21:38504701-38506502~~chr21:39152806-39154190,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504704-38506958~~chr21:39135757-39139157,
chr21:38504708-38507639~~chr21:39135753-39139144,
chr21:38504709-38506958~~chr21:38711358-38713304,
chr21:38504709-38506958~~chr21:39136233-39139143,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504715-38506948~~chr21:39136158-39139240,
chr21:38504715-38507432~~chr21:39137265-39139144,
chr21:38504722-38507046~~chr21:39135777-39139215,
chr21:38504723-38507444~~chr21:39135766-39139156,
chr21:38504725-38506920~~chr21:39136965-39139305,
chr21:38504729-38506966~~chr21:39136708-39139166,
chr21:38504735-38506980~~chr21:39135742-39136980,
chr21:38504738-38506474~~chr21:39137262-39139083,
chr21:38504739-38507562~~chr21:39137207-39139175,
chr21:38504739-38507562~~chr21:39440834-39442538,
chr21:38504745-38506938~~chr21:39136790-39139170,
chr21:38504745-38506938~~chr21:39174194-39176266,
chr21:38504757-38506917~~chr21:38711337-38713109,
chr21:38504783-38506832~~chr21:39135735-39136956,
chr21:38504783-38506832~~chr21:39137550-39139120,
chr21:38504824-38507757~~chr21:39135757-39139204,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38504928-38507061~~chr21:39135759-39139198,
chr21:38504928-38507061~~chr21:39152794-39154209,
chr21:38504928-38507061~~chr21:39174538-39176142,
chr21:38505033-38506464~~chr21:39136191-39139182,
chr21:38505044-38506990~~chr21:38711624-38712942,
chr21:38505044-38506990~~chr21:39135737-39136964,
chr21:38505069-38506955~~chr21:38711492-38712926,
chr21:38505086-38506468~~chr21:39136216-39139158,
chr21:38505090-38506554~~chr21:38711400-38712971,
chr21:38505153-38506875~~chr21:39125458-39126872,
chr21:38505153-38506875~~chr21:39135794-39136979,
chr21:38505153-38506875~~chr21:39137264-39139102,
chr21:38505153-38506875~~chr21:39174680-39176016,
chr21:38505190-38506606~~chr21:39136767-39139174,
chr21:38505221-38506513~~chr21:39137257-39139089,
chr21:38511147-38512755~~chr21:39136825-39139305,
chr21:38511187-38512681~~chr21:39136158-39139240,
chr21:38511190-38512744~~chr21:39135761-39139165,
chr21:38511252-38512555~~chr21:39135781-39139348,
chr21:38511272-38512659~~chr21:38711443-38713180,