- Basic information
- CohesinDB ID: CDBP00419211
- Locus: chr21-38525327-38525704
-
Data sourse: GSE206145-NatGen2015, GSE72082, GSE67783, GSE68388
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Cell type: Fibroblast, HSPC, Hep-G2, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 61%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, HMG20A, SOX2, HNF1A, XBP1, FOXA1, HLF, RBFOX2, RXRB, SFMBT1, KDM3A, TFAP4, ZFHX2, THRB, NFIC, ZFP64, PRDM1, MXD4, ZSCAN4, ZNF320, CDX2, MAF, ZNF629, TEAD1, KLF6, KLF10, RCOR2, ESR1, JUN, EP300, LMO1, SOX5, GATA6, DMAP1, E2F6, IRF4, TEAD4, FOXA3, ZNF175, GATAD2A, GTF2F1, MLX, RBPJ, GLIS1, CHD8, ZNF263, HHEX, TOP2A, RUNX1T1, ZSCAN21, ZBTB17, ZNF563, GATAD1, SAP130, ARID3A, ERG2, TBP, HNF4G, ZBTB21, ONECUT1, MYC, HOMEZ, RAD21, GRHL3, RXRA, MCRS1, GABPA, XRCC5, ZNF614, UBN1, ZNF398, MIER3, ZNF667, NR2F6, CEBPB, CREB1, EZH2, TBL1XR1, KLF8, ZNF652, HES1, SPI1, MIXL1, TFE3, HDAC2, GATA2, INTS13, ZNF644, SIX2, DRAP1, ZGPAT, NFIL3, ZNF554, ETV5, RUNX1, THAP11, BCL6, CEBPA, EZH2phosphoT487, SOX13, ZFX, ZFP37, CBX8, TBX3, SP5, ERG3, SMARCC1, PRDM10, ZNF549, MYBL2, RARA, NFYC, CDK6, ARNT, ZNF48, SMAD4, FOS, HMGXB4, TEAD3, ZEB1, SCRT2, ZNF3, HIF2A, SP1, HNF4A, IKZF5, REST, ASH2L, PCGF2, TCF3, FOXP1, STAG1, ETV4, ZNF394, SKI, PPARG, FOXA2, ZNF316, CREM, MIER2, ZNF692, TCF7, ZNF580, FOXO3, KDM1A, YY1, RELA, ZFP36, HIF1A, TCF4, BATF, TAL1, MAX, NRIP1, ZNF143, TLE3, CEBPG, SP7, NCOA3, NR2F2, ZNF281, EGR2, ELF3, PHF5A, KAT8, NFKBIZ, ARID4B, AR, EGLN2, ZNF366, EGR1, ZBTB26, RNF2, NOTCH3, SCRT1, JUND, BRD4, MAZ, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): ERG,LCA5L,SH3BGR,B3GALT5,GET1-SH3BGR,PSMG1,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000183527,
ENSG00000285815,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:37925000-37950000~~chr21:38525000-38550000,
chr21:38075000-38100000~~chr21:38525000-38550000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38150000-38175000~~chr21:38525000-38550000,
chr21:38375000-38400000~~chr21:38500000-38525000,
chr21:38375000-38400000~~chr21:38525000-38550000,
chr21:38500000-38525000~~chr21:38625000-38650000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38700000-38725000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38800000-38825000,
chr21:38500000-38525000~~chr21:38850000-38875000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38500000-38525000~~chr21:39375000-39400000,
chr21:38525000-38550000~~chr21:38625000-38650000,
chr21:38525000-38550000~~chr21:38700000-38725000,
chr21:38525000-38550000~~chr21:38850000-38875000,
chr21:38525000-38550000~~chr21:38875000-38900000,
chr21:38525000-38550000~~chr21:38950000-38975000,
chr21:38525000-38550000~~chr21:39050000-39075000,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38525000-38550000~~chr21:39150000-39175000,
chr21:38525000-38550000~~chr21:39450000-39475000,
chr21:38525000-38550000~~chr21:39600000-39625000,