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Basic information

CohesinDB ID: CDBP00419213

Locus: chr21-38531264-38531985

Data sourse: GSE206145-NatGen2015, ENCSR000EHX, ENCSR000BLY

Cell type: Fibroblast, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 63%, "14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBFA2T2, CHD2, TOP2A, ZFX, NME2, FOXA1, SMARCC1, TWIST1, KDM1A, ERG, YY1, ATF3, RUNX2, RAD21, HIF1A, CBFB, ATF2, RCOR1, MED1, MYOG, CREB1, EZH2, LMO2, ESR1, EBF3, TCF12, EP300, AR, REST, ATF7, RNF2, JUND, PCGF2, BRD4, MRTFB

Target gene symbol (double-evidenced CRMs): LCA5L,PSMG1,B3GALT5,KCNJ6,ERG,SH3BGR,GET1-SH3BGR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 42

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157554, ENSG00000183527, ENSG00000285815, ENSG00000157578, ENSG00000185437, ENSG00000183778,

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Deatailed information for cohesin site CDBP00419213