- Basic information
- CohesinDB ID: CDBP00419215
- Locus: chr21-38548479-38549133
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,PSMG1,KCNJ6,SH3BGR,B3GALT5,LCA5L,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000183527,
ENSG00000285815,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:37925000-37950000~~chr21:38525000-38550000,
chr21:38075000-38100000~~chr21:38525000-38550000,
chr21:38150000-38175000~~chr21:38525000-38550000,
chr21:38375000-38400000~~chr21:38525000-38550000,
chr21:38525000-38550000~~chr21:38625000-38650000,
chr21:38525000-38550000~~chr21:38700000-38725000,
chr21:38525000-38550000~~chr21:38850000-38875000,
chr21:38525000-38550000~~chr21:38875000-38900000,
chr21:38525000-38550000~~chr21:38950000-38975000,
chr21:38525000-38550000~~chr21:39050000-39075000,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38525000-38550000~~chr21:39150000-39175000,
chr21:38525000-38550000~~chr21:39450000-39475000,
chr21:38525000-38550000~~chr21:39600000-39625000,