- Basic information
- CohesinDB ID: CDBP00419221
- Locus: chr21-38572074-38572357
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Data sourse: GSE206145-GSE177045, GSE67783
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Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 59%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157554,
- Related loop:
chr21:38050000-38075000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38350000-38375000~~chr21:38575000-38600000,
chr21:38375000-38400000~~chr21:38575000-38600000,
chr21:38400000-38425000~~chr21:38575000-38600000,
chr21:38575000-38600000~~chr21:38675000-38700000,
chr21:38575000-38600000~~chr21:38850000-38875000,
chr21:38575000-38600000~~chr21:38925000-38950000,
chr21:38575000-38600000~~chr21:39000000-39025000,
chr21:38575000-38600000~~chr21:39375000-39400000,