- Basic information
- CohesinDB ID: CDBP00419222
- Locus: chr21-38576611-38576930
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, GLIS1, TRIM25, POU2F2, CHD8, FOSL1, ZSCAN5D, POU5F1, EZH2phosphoT487, MYCN, ID3, ZFX, ZNF263, XBP1, MAFF, DUX4, STAT1, FOXA1, ZBTB48, SRF, CBX8, WT1, TET2, ZSCAN5A, ZNF300, YY1, RELA, ASCL1, ZNF90, AHR, MYC, ATF3, SMARCA4, CHD7, PRDM1, ARNT, SP140, ZIC2, GRHL3, MCM3, MECOM, TAL1, PAX5, MAX, ZNF143, MITF, CEBPB, ZEB1, NCOA3, MYB, TFAP2C, NR2F1, CREB1, EZH2, ESR1, OCA2, C11orf30, GRHL2, ZNF334, TBX5, SREBF2, CTCF, MAFK, BCL11A, SPI1, LMO1, AR, ZNF257, NKX2-5, IRF4, ZBTB42, HSF1, NOTCH3, BRD4, E2F1, ZNF528, ZNF350, MAZ, SMC3, AATF, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,KCNJ6,GET1,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38050000-38075000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38350000-38375000~~chr21:38575000-38600000,
chr21:38375000-38400000~~chr21:38575000-38600000,
chr21:38400000-38425000~~chr21:38575000-38600000,
chr21:38575000-38600000~~chr21:38675000-38700000,
chr21:38575000-38600000~~chr21:38850000-38875000,
chr21:38575000-38600000~~chr21:38925000-38950000,
chr21:38575000-38600000~~chr21:39000000-39025000,
chr21:38575000-38600000~~chr21:39375000-39400000,