- Basic information
- CohesinDB ID: CDBP00419229
- Locus: chr21-38597537-38597765
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Data sourse: GSE206145-NatGen2015, GSE68388
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Cell type: Fibroblast, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 45%,
"15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, HMG20A, SOX2, NME2, XBP1, FOXA1, SUZ12, ZFHX2, ATF3, CHD7, ZSCAN4, MITF, CDX2, MYOG, TEAD1, TRIM28, ETV1, ZNF217, ESR1, LMO2, JUN, CTCF, BAF155, EP300, SOX5, DPF2, TEAD4, FOXA3, TFAP2C, GLIS1, BRD1, ZSCAN5D, POU5F1, MYCN, TOP2A, ZNF263, RUNX1T1, CTBP1, ZBTB48, ZSCAN5A, DUX4, SAP130, DDX5, ERG2, ERG, MYC, HOMEZ, GRHL3, PROX1, NKX2-1, GABPA, XRCC5, RCOR1, NR2F6, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, EZH2, GRHL2, ZNF652, SPI1, TFE3, ZNF257, HDAC2, GATA2, FLI1, ZGPAT, RUNX1, CBX1, SMC1A, CEBPA, EZH2phosphoT487, SIN3A, ZFX, SMAD3, ERG3, CBX8, CREBBP, RARA, ARNT, PRDM9, CHD1, FOS, MED1, SPDEF, PIAS1, TFAP2A, ASH2L, CTBP2, FOXP1, STAG1, ZNF283, FOXA2, ZSCAN16, WT1, HOXB13, YY1, RELA, TARDBP, SP140, HIF1A, GATA3, MAX, NRIP1, CBX2, TLE3, NR2F2, KDM5B, TP53, ZBTB6, ZNF334, MYOD1, EGR2, PHOX2B, ELF3, AR, HSF1, RNF2, NCOR1, BRD4, JUND, NOTCH3, ZBTB26, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6,ERG,GET1-SH3BGR,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38050000-38075000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38350000-38375000~~chr21:38575000-38600000,
chr21:38375000-38400000~~chr21:38575000-38600000,
chr21:38400000-38425000~~chr21:38575000-38600000,
chr21:38575000-38600000~~chr21:38675000-38700000,
chr21:38575000-38600000~~chr21:38850000-38875000,
chr21:38575000-38600000~~chr21:38925000-38950000,
chr21:38575000-38600000~~chr21:39000000-39025000,
chr21:38575000-38600000~~chr21:39375000-39400000,
chr21:38600000-38625000~~chr21:38700000-38725000,