- Basic information
- CohesinDB ID: CDBP00419239
- Locus: chr21-38631075-38632314
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 44%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, PGR, CHD8, ZNF496, ZNF263, EZH2phosphoT487, SS18, XBP1, SMAD3, WT1, DUX4, FOXA1, ZNF205, MLLT3, BAHD1, HNRNPK, YY1, RELA, CREBBP, ERG, ZNF19, KDM1A, JUNB, RUNX2, MYC, CHD7, RAD21, ARNT, RUNX3, HIF1A, GRHL3, PBX4, BATF, STAT3, MAX, NRIP1, ZNF143, IKZF1, FOS, RCOR1, MED1, NR3C1, CEBPB, ZNF750, NCOA3, ELF1, TRIM28, KLF4, SCRT2, ETV1, ZMYM3, EZH2, ESR1, OCA2, GRHL2, ZNF565, CTCF, BRD2, SPI1, AR, GATA2, ZNF324, RBM25, EGR1, FLI1, HSF1, SCRT1, BRD4, NCOA2, AHR
- Target gene symbol (double-evidenced CRMs): B3GALT5,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 155
- Number of somatic mutations (non-coding): 0
- Related genes and loops