- Basic information
- CohesinDB ID: CDBP00419242
- Locus: chr21-38639807-38640047
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Data sourse: GSE111537, GSE206145-NatGen2015
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Cell type: Fibroblast, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 38%,
"15_Quies": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, ZNF554, CEBPA, NME2, ZFX, DUX4, CDK9, IRF2, ASCL1, KAT2B, RUNX2, MYC, ONECUT1, PRDM1, MAX, FOS, IKZF1, CDK8, INTS11, JMJD1C, TRIM28, KMT2A, MYB, MED, STAT5A, EGR2, CTCF, BCL11A, SPI1, AR, IRF1, IRF4, TRIM24, FLI1, ASH2L, BRD4, CUX1, KMT2B
- Target gene symbol (double-evidenced CRMs): B3GALT5,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 70
- Number of somatic mutations (non-coding): 0
- Related genes and loops