- Basic information
- CohesinDB ID: CDBP00419248
- Locus: chr21-38666630-38671138
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, ENCSR000BLD, GSE104888, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE115250, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, GM19240, HSPC, Liver, GP5d, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, THP-1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 58% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.322
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 48%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, OGG1
- Target gene symbol (double-evidenced CRMs): ETS2,ERG,KCNJ6,PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 23
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
- Related loop:
chr21:37800000-37825000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38675000-38700000,
chr21:38150000-38175000~~chr21:38675000-38700000,
chr21:38375000-38400000~~chr21:38650000-38675000,
chr21:38375000-38400000~~chr21:38675000-38700000,
chr21:38475000-38500000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38575000-38600000~~chr21:38675000-38700000,
chr21:38650000-38675000~~chr21:38750000-38775000,
chr21:38650000-38675000~~chr21:38800000-38825000,
chr21:38650000-38675000~~chr21:39000000-39025000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39150000-39175000,
chr21:38668369-38670536~~chr21:39135774-39139290,
chr21:38668432-38670423~~chr21:38711345-38713246,
chr21:38668432-38670423~~chr21:39135752-39139234,
chr21:38668443-38670408~~chr21:39125161-39127119,
chr21:38668443-38670408~~chr21:39135763-39136936,
chr21:38668443-38670408~~chr21:39136965-39139305,
chr21:38668443-38670408~~chr21:39174561-39176567,
chr21:38668473-38670334~~chr21:39136825-39139305,
chr21:38668492-38670300~~chr21:39137207-39139175,
chr21:38668589-38670460~~chr21:39137271-39139180,
chr21:38668612-38670314~~chr21:39135742-39136980,
chr21:38668612-38670314~~chr21:39174250-39176317,
chr21:38668618-38670577~~chr21:38711365-38713290,
chr21:38668618-38670577~~chr21:38795738-38797863,
chr21:38668618-38670577~~chr21:39125156-39127107,
chr21:38668618-38670577~~chr21:39135757-39139176,
chr21:38668646-38670341~~chr21:39135759-39139198,
chr21:38668658-38670293~~chr21:39135754-39136962,
chr21:38668658-38670293~~chr21:39137265-39139144,
chr21:38668668-38670175~~chr21:39174586-39175835,
chr21:38668670-38670341~~chr21:39135777-39139215,
chr21:38668681-38670318~~chr21:39136853-39139127,
chr21:38668690-38670119~~chr21:39125458-39126872,
chr21:38668690-38670119~~chr21:39137264-39139102,
chr21:38668700-38670270~~chr21:39135761-39139165,
chr21:38668723-38670034~~chr21:39137401-39139164,
chr21:38668743-38670427~~chr21:39135787-39137068,
chr21:38675000-38700000~~chr21:39125000-39150000,