- Basic information
- CohesinDB ID: CDBP00419251
- Locus: chr21-38678221-38680810
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Data sourse: GSE98367, ENCSR000BSB, GSE110061, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE73207, GSE165895
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Cell type: RPE, Macrophage, Fibroblast, HCT-116, TF-1, K-562, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 35%,
"15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, SMARCA2, MEIS2, FOXA1, PBX2, MLL4, ZFHX2, HNRNPK, TFAP4, ATF3, NFIC, RUNX3, PRDM1, CHD7, CBFB, MECOM, ZNF189, PAX5, JMJD1C, TEAD1, TRIM28, KLF6, ETV1, ESR1, MLL, HNF1B, CTCF, TCF12, JUN, BAF155, EP300, SIX5, IRF4, ZNF350, TEAD4, KMT2B, MYCN, POU5F1, TOP2A, KDM4C, RUNX1T1, ZNF317, MTA2, ZBTB48, DUX4, STAT1, SRF, DDX5, ARID3A, ERG, OGG1, ETS1, MYC, SMARCA4, RAD21, RXRA, GABPA, STAT3, VDR, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, EZH2, GABPB1, SPI1, IRF1, PCBP1, GATA2, FLI1, HCFC1R1, MRTFB, RUNX1, SMC1A, ZBTB24, EZH2phosphoT487, ZFX, SMAD3, PCBP2, ERG3, CBX8, SMARCC1, PRDM10, MEF2A, RUNX2, PBX4, DAXX, ARNT, ZNF708, ATF2, HMBOX1, PBX3, FOS, CDK8, MED1, DIDO1, MYB, ZMYM3, BCL11A, SP1, REST, RBM25, ATF7, PCGF2, PHIP, BCOR, TCF3, MEF2B, TBL1X, CBX3, CREM, MEIS1, PAF1, SS18, EBF1, ZNF692, WT1, ESR2, MEF2C, CDK9, HOXB13, KDM1A, RELA, JUNB, ZFP36, GATA3, BATF, TAL1, MAX, KLF4, TCF7L2, NR2F1, TP53, PKNOX1, MED, ZNF334, EGR2, ELF3, TBX21, PAX3-FOXO1, AR, RXR, EGR1, RNF2, NOTCH3, BRD4, JUND, SCRT1, MEF2D, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
- Related loop:
chr21:37800000-37825000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38675000-38700000,
chr21:38150000-38175000~~chr21:38675000-38700000,
chr21:38158438-38160422~~chr21:38679162-38680418,
chr21:38375000-38400000~~chr21:38650000-38675000,
chr21:38375000-38400000~~chr21:38675000-38700000,
chr21:38475000-38500000~~chr21:38675000-38700000,
chr21:38500000-38525000~~chr21:38650000-38675000,
chr21:38500000-38525000~~chr21:38675000-38700000,
chr21:38575000-38600000~~chr21:38675000-38700000,
chr21:38650000-38675000~~chr21:38750000-38775000,
chr21:38650000-38675000~~chr21:38800000-38825000,
chr21:38650000-38675000~~chr21:39000000-39025000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39150000-39175000,
chr21:38675000-38700000~~chr21:39125000-39150000,