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Basic information

CohesinDB ID: CDBP00419257

Locus: chr21-38700535-38701065

Data sourse: ENCSR000BLD, GSE86191, GSE68388

Cell type: H1-hESC, HCT-116, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 41%, "15_Quies": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, BRD1, ZSCAN5D, TERF1, SNAI2, ZFX, RAD21, SCRT1, ZIM3, FOXA1, USF2, TAL1, MAX, CTCF, USF1, MITF, HNF4A

Target gene symbol (double-evidenced CRMs): PSMG1,KCNJ6,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157554, ENSG00000183527,

eachgene

Deatailed information for cohesin site CDBP00419257