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Basic information

CohesinDB ID: CDBP00419259

Locus: chr21-38702989-38703239

Data sourse: GSE206145-NatGen2015, GSE67783

Cell type: Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 49%, "15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, EZH2phosphoT487, ZFX, ZBTB48, FOXA1, SUZ12, HOXB13, ERG, RELA, GABPA, GATA1, ZNF736, KLF5, ELF1, ETV1, EZH2, SPI1, EP300, AR, ASH2L, PCGF2

Target gene symbol (double-evidenced CRMs): KCNJ6,PSMG1,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157554, ENSG00000183527,

eachgene

Deatailed information for cohesin site CDBP00419259