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Basic information

CohesinDB ID: CDBP00419260

Locus: chr21-38703807-38703915

Data sourse: ENCSR000BTQ, GSE72082

Cell type: MCF-7

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 46%, "15_Quies": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF384, NR3C1, POU5F1, MYB, ETV1, SOX2, SS18, EZH2, PCGF2, FOXF1, CBX8, SUZ12, SPI1

Target gene symbol (double-evidenced CRMs): KCNJ6,ERG,PSMG1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157554, ENSG00000183527,

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Deatailed information for cohesin site CDBP00419260