- Basic information
- CohesinDB ID: CDBP00419261
- Locus: chr21-38707733-38707894
-
Data sourse: GSE206145-NatGen2015, GSE25021
-
Cell type: MCF-7, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CREB1, NME2, ZFX, ZSCAN5A, ATF2, BCL11A
- Target gene symbol (double-evidenced CRMs): ERG,PSMG1,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000183527,
- Related loop:
chr21:37725000-37750000~~chr21:38700000-38725000,
chr21:38075000-38100000~~chr21:38700000-38725000,
chr21:38150000-38175000~~chr21:38700000-38725000,
chr21:38375000-38400000~~chr21:38700000-38725000,
chr21:38425000-38450000~~chr21:38700000-38725000,
chr21:38450000-38475000~~chr21:38700000-38725000,
chr21:38500000-38525000~~chr21:38700000-38725000,
chr21:38504657-38506967~~chr21:38711299-38713234,
chr21:38504659-38506970~~chr21:38711337-38713456,
chr21:38504682-38506897~~chr21:38711342-38713466,
chr21:38504693-38507356~~chr21:38711365-38713290,
chr21:38504709-38506958~~chr21:38711358-38713304,
chr21:38504757-38506917~~chr21:38711337-38713109,
chr21:38505044-38506990~~chr21:38711624-38712942,
chr21:38505069-38506955~~chr21:38711492-38712926,
chr21:38505090-38506554~~chr21:38711400-38712971,
chr21:38511272-38512659~~chr21:38711443-38713180,
chr21:38525000-38550000~~chr21:38700000-38725000,
chr21:38600000-38625000~~chr21:38700000-38725000,
chr21:38620584-38622050~~chr21:38711370-38712948,
chr21:38668432-38670423~~chr21:38711345-38713246,
chr21:38668618-38670577~~chr21:38711365-38713290,
chr21:38700000-38725000~~chr21:39050000-39075000,
chr21:38700000-38725000~~chr21:39100000-39125000,
chr21:38700000-38725000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39150000-39175000,
chr21:38711369-38713335~~chr21:39135774-39139290,
chr21:38711393-38713353~~chr21:39135753-39139144,
chr21:38711440-38713239~~chr21:39125215-39127084,
chr21:38711664-38713198~~chr21:39136158-39139240,