- Basic information
- CohesinDB ID: CDBP00419271
- Locus: chr21-38739757-38741012
-
Data sourse: ENCSR230ZWH, GSE98367, GSE138405, GSE206145-NatGen2015, GSE62063, GSE120943, ENCSR917QNE
-
Cell type: Hela-Kyoto, Fibroblast, Monocytes, Liver, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 39%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, PGR, FOXA2, ZSCAN16, GTF2B, STAT1, FOXA1, PRDM10, KDM1A, YY1, ERG, MYC, RUNX2, CDK6, HOMEZ, RAD21, RXRA, SMAD4, GABPA, ZNF614, NR3C1, TEAD3, TRIM28, PHOX2B, CTCF, ELF3, SPI1, BCL11A, AR, IRF1, GATA2, REST, ZNF644, POU2F3, ZBTB26, DRAP1, BRD4, FOXA3, ETV5, AHR
- Target gene symbol (double-evidenced CRMs): PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000183527,
- Related loop:
chr21:38725000-38750000~~chr21:38850000-38875000,
chr21:38725000-38750000~~chr21:38875000-38900000,
chr21:38725000-38750000~~chr21:38900000-38925000,
chr21:38725000-38750000~~chr21:38975000-39000000,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38725000-38750000~~chr21:39150000-39175000,
chr21:38732441-38735255~~chr21:39124252-39127148,
chr21:38732441-38735255~~chr21:39134896-39136193,
chr21:38732441-38735255~~chr21:39136199-39139181,
chr21:38732441-38735255~~chr21:39152908-39154177,
chr21:38732695-38735241~~chr21:39066299-39068801,
chr21:38732695-38735241~~chr21:39125188-39128467,
chr21:38732695-38735241~~chr21:39136158-39139240,
chr21:38732707-38735284~~chr21:38804228-38806108,
chr21:38732707-38735284~~chr21:39066439-39068713,
chr21:38732707-38735284~~chr21:39125195-39128459,
chr21:38732707-38735284~~chr21:39136221-39139367,
chr21:38732732-38735278~~chr21:39086152-39087364,
chr21:38732732-38735278~~chr21:39125141-39127110,
chr21:38732732-38735278~~chr21:39135742-39136980,
chr21:38732732-38735278~~chr21:39137257-39139164,
chr21:38732732-38735278~~chr21:39174250-39176317,
chr21:38732755-38735268~~chr21:39127096-39128415,
chr21:38732755-38735268~~chr21:39135781-39139348,
chr21:38732774-38735251~~chr21:39086169-39087327,
chr21:38732774-38735251~~chr21:39125169-39127059,
chr21:38732774-38735251~~chr21:39136853-39139127,
chr21:38732781-38735273~~chr21:38804159-38806607,
chr21:38732781-38735273~~chr21:39125163-39127081,
chr21:38732781-38735273~~chr21:39135774-39139290,
chr21:38732781-38735273~~chr21:39174254-39176512,
chr21:38732867-38735207~~chr21:39088403-39089864,
chr21:38732867-38735207~~chr21:39125201-39127072,
chr21:38732867-38735207~~chr21:39135759-39139198,
chr21:38732878-38735149~~chr21:39125097-39127121,
chr21:38732878-38735149~~chr21:39135777-39139304,
chr21:38732907-38735171~~chr21:39125144-39128433,
chr21:38732907-38735171~~chr21:39136778-39139387,
chr21:38732910-38735120~~chr21:38796027-38797368,
chr21:38732910-38735120~~chr21:39125317-39127099,
chr21:38732910-38735120~~chr21:39136838-39139138,
chr21:38732911-38735131~~chr21:39136708-39139166,
chr21:38732912-38735244~~chr21:39125068-39127102,
chr21:38732912-38735244~~chr21:39135752-39139340,
chr21:38732913-38735227~~chr21:39125178-39127111,
chr21:38732913-38735227~~chr21:39136217-39139134,
chr21:38732918-38735320~~chr21:38795856-38797513,
chr21:38732918-38735320~~chr21:39037089-39038810,
chr21:38732918-38735320~~chr21:39066991-39068385,
chr21:38732918-38735320~~chr21:39083341-39084889,
chr21:38732918-38735320~~chr21:39086131-39087401,
chr21:38732918-38735320~~chr21:39125161-39127119,
chr21:38732918-38735320~~chr21:39135763-39136936,
chr21:38732918-38735320~~chr21:39136965-39139305,
chr21:38732922-38735240~~chr21:39120293-39121764,
chr21:38732922-38735240~~chr21:39125151-39127099,
chr21:38732922-38735240~~chr21:39135753-39139144,
chr21:38733038-38735171~~chr21:39137207-39139175,
chr21:38733040-38735256~~chr21:39125142-39127123,
chr21:38733040-38735256~~chr21:39136790-39139170,
chr21:38733058-38735154~~chr21:39136784-39139132,
chr21:38733090-38735078~~chr21:39135768-39139113,
chr21:38733095-38735102~~chr21:39137262-39139083,
chr21:38733109-38735129~~chr21:39114383-39115550,
chr21:38733109-38735129~~chr21:39125260-39127025,
chr21:38733109-38735129~~chr21:39136233-39139143,
chr21:38733112-38735280~~chr21:39125212-39128459,
chr21:38733112-38735280~~chr21:39136825-39139305,
chr21:38733112-38735280~~chr21:39174255-39176521,
chr21:38733113-38735237~~chr21:39125254-39127058,
chr21:38733113-38735237~~chr21:39135777-39139215,
chr21:38733115-38735253~~chr21:39022229-39023588,
chr21:38733115-38735253~~chr21:39125310-39127084,
chr21:38733115-38735253~~chr21:39135735-39136956,
chr21:38733115-38735253~~chr21:39137550-39139120,
chr21:38733115-38735333~~chr21:38795732-38798347,
chr21:38733115-38735333~~chr21:39066051-39068459,
chr21:38733115-38735333~~chr21:39125098-39127101,
chr21:38733115-38735333~~chr21:39135752-39139234,
chr21:38733120-38735170~~chr21:39125209-39127143,
chr21:38733120-38735170~~chr21:39136279-39139355,
chr21:38733127-38735156~~chr21:39125374-39126978,
chr21:38733127-38735156~~chr21:39137693-39139106,
chr21:38733127-38735189~~chr21:38804397-38807388,
chr21:38733127-38735189~~chr21:39020330-39024316,
chr21:38733127-38735189~~chr21:39125161-39127067,
chr21:38733127-38735189~~chr21:39136216-39139158,
chr21:38733139-38735257~~chr21:39136627-39139221,
chr21:38733143-38735119~~chr21:39125217-39127141,
chr21:38733143-38735119~~chr21:39137694-39139273,
chr21:38733149-38735103~~chr21:39137200-39139115,
chr21:38733149-38735253~~chr21:39125305-39127127,
chr21:38733149-38735253~~chr21:39135761-39139165,
chr21:38733167-38735225~~chr21:39136793-39139191,
chr21:38733294-38735138~~chr21:39135754-39136962,
chr21:38733295-38735171~~chr21:38804079-38807181,
chr21:38733295-38735171~~chr21:39022214-39024026,
chr21:38733295-38735171~~chr21:39125184-39128368,
chr21:38733295-38735171~~chr21:39135757-39136968,
chr21:38733299-38735274~~chr21:39125124-39127062,
chr21:38733299-38735274~~chr21:39135757-39139157,
chr21:38733311-38735294~~chr21:38795738-38797863,
chr21:38733311-38735294~~chr21:39065920-39068738,
chr21:38733311-38735294~~chr21:39125156-39127107,
chr21:38733311-38735294~~chr21:39135757-39139176,
chr21:38733315-38735206~~chr21:38804450-38807728,
chr21:38733315-38735206~~chr21:39125126-39127076,
chr21:38733315-38735206~~chr21:39136191-39139182,
chr21:38733333-38735287~~chr21:39125164-39127080,
chr21:38733333-38735287~~chr21:39127128-39128385,
chr21:38733333-38735287~~chr21:39135766-39139156,
chr21:38733337-38735102~~chr21:39135737-39136964,
chr21:38733337-38735102~~chr21:39137401-39139164,
chr21:38733340-38735147~~chr21:39125392-39126982,
chr21:38733340-38735147~~chr21:39135757-39139091,
chr21:38733341-38735220~~chr21:38795780-38799297,
chr21:38733341-38735220~~chr21:39125246-39127033,
chr21:38733341-38735220~~chr21:39135746-39136928,
chr21:38733341-38735220~~chr21:39137271-39139180,
chr21:38733350-38735147~~chr21:39125287-39127030,
chr21:38733359-38735265~~chr21:39136719-39139116,
chr21:38733363-38735045~~chr21:39125243-39126927,
chr21:38733366-38735207~~chr21:39137617-39139161,
chr21:38733385-38734881~~chr21:39137257-39139089,
chr21:38733386-38735279~~chr21:39137377-39139144,
chr21:38733387-38735224~~chr21:39137436-39139060,
chr21:38733388-38735159~~chr21:39125429-39126867,
chr21:38733388-38735159~~chr21:39137401-39139117,
chr21:38733388-38735372~~chr21:39125407-39126885,
chr21:38733388-38735372~~chr21:39137249-39139154,
chr21:38733389-38735343~~chr21:39125458-39126872,
chr21:38733389-38735343~~chr21:39135794-39136979,
chr21:38733389-38735343~~chr21:39137264-39139102,
chr21:38733392-38735130~~chr21:39137353-39139078,
chr21:38733392-38735200~~chr21:39086157-39087349,
chr21:38733392-38735200~~chr21:39137401-39139120,
chr21:38733416-38734790~~chr21:39136767-39139174,
chr21:38733445-38735107~~chr21:39125220-39127056,