- Basic information
- CohesinDB ID: CDBP00419272
- Locus: chr21-38741965-38744918
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Data sourse: GSE105004, GSE67783, GSE86191, GSE98367, GSE206145, GSE101921, GSE206145-NatGen2015, GSE120943, GSE80989, GSE73207
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Cell type: RPE, Fibroblast, HCT-116, Monocytes, TF-1, HCAEC, VU1199-F, HeLa, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SMC1,ESCO2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 40%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, ZNF426, XBP1, FOXA1, SUZ12, ZNF596, CHD7, TP63, HDAC3, CDX2, MAF, TRIM28, BCLAF1, ETV1, ESR1, OCA2, CTCF, TCF12, JUN, BAF155, EP300, SMC1, TEAD4, RBPJ, GLIS1, POU2F2, CHD8, MYCN, POU5F1, RUNX1T1, TOP2A, ZNF317, ERF, DUX4, ZBTB48, STAT1, ERG, ZNF114, OGG1, ETS1, MYC, RFX1, RAD21, FOXP2, GRHL3, GABPA, ZNF398, RCOR1, NFE2, NR2F6, ZNF750, CEBPB, ESRRA, KMT2A, CREB1, YBX3, EZH2, BMPR1A, GRHL2, SPI1, ZNF202, HDAC2, GATA2, GATAD2B, FLI1, NCOA2, SALL2, RUNX1, CTNNB1, SMC1A, CEBPA, LDB1, NKX2-2, ZFX, POU4F2, ZNF473, CREBBP, ZNF35, ZNF384, NRF1, NFIB, ARNT, ZNF48, CBFA2T3, PBX3, FOS, CDK8, MED1, ZMYM3, C11orf30, BCL11A, ZBTB7A, RBM25, POU2F3, ASH2L, TCF3, BCOR, FOXP1, SMC3, STAG1, ZNF207, ZSCAN16, WT1, ZNF662, ZBTB33, HOXB13, KDM1A, YY1, RELA, TARDBP, ZNF148, SP140, HIF1A, GATA3, ZNF311, TAL1, NRIP1, ZNF143, GATA1, KLF4, NCOA3, NR2F2, ZNF512, ZNF687, PKNOX1, ELF3, PAX3-FOXO1, AR, RXR, ZNF366, HSF1, NCOR1, RNF2, BRD4, JUND, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops