- Basic information
- CohesinDB ID: CDBP00419273
- Locus: chr21-38748492-38748976
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, BCL6, PPARG, CEBPA, HMG20A, FOXA2, CHD8, SOX13, ZFX, MYCN, HNF1A, ZBTB48, WT1, ARID3A, RXRB, HOXB13, KDM1A, YY1, RARA, ZNF384, MYC, HOMEZ, RAD21, SP140, GRHL3, ARNT, RXRA, SMAD4, XRCC5, MAX, NRIP1, NR2F6, CDX2, CEBPG, TEAD3, NCOA3, KLF6, RCOR2, ESR1, ZNF652, SETDB1, GABPB1, ELF3, KAT8, SP1, SPI1, MIXL1, HNF4A, USF1, SOX5, E2F6, MXD3, ASH2L, DRAP1, ZGPAT, ZBTB26, MAZ, FOXA3, GATAD2A, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000183527,
- Related loop:
chr21:34525000-34550000~~chr21:38750000-38775000,
chr21:38250000-38275000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38650000-38675000~~chr21:38750000-38775000,
chr21:38725000-38750000~~chr21:38850000-38875000,
chr21:38725000-38750000~~chr21:38875000-38900000,
chr21:38725000-38750000~~chr21:38900000-38925000,
chr21:38725000-38750000~~chr21:38975000-39000000,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38725000-38750000~~chr21:39150000-39175000,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38750000-38775000~~chr21:39375000-39400000,