- Basic information
- CohesinDB ID: CDBP00419277
- Locus: chr21-38758589-38759179
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Data sourse: GSE98367, ENCSR000BLY, ENCSR000EHW, GSE206145-NatGen2015, ENCSR000EHX, GSE165895
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Cell type: SK-N-SH, Fibroblast, Macrophage, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SMC3,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 43%,
"5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, SOX2, MEIS2, FOXA1, PBX2, BMI1, NFIC, ATF3, CHD7, PRDM1, SMARCE1, PAX5, TP63, MITF, JMJD1C, TEAD1, TRIM28, ZNF121, ETV1, RBM39, NFE2L2, PITX3, CTCF, TCF12, JUN, EP300, DPF2, E2F6, TRIM24, SOX6, TEAD4, KMT2B, TFAP2C, ID3, CTBP1, ZBTB48, ZSCAN5A, STAT1, SRF, DDX5, ERG, OGG1, ONECUT1, MYC, SMARCA4, ARID1B, RAD21, RXRA, PRDM14, RCOR1, NFE2, VDR, NR3C1, CEBPB, BMPR1A, EBF3, SPI1, HDAC2, GATA2, ZSCAN29, FLI1, ATF1, RUNX1, SMC1A, MAFG, HDAC1, LDB1, NKX2-2, SIN3A, ZFX, ZNF534, CBX8, TWIST1, MEF2A, CREBBP, ZNF384, RUNX2, GATA4, ARNT, ELK1, HMBOX1, ZEB2, PBX3, FOXM1, CBFA2T3, CDK8, MED1, C11orf30, L3MBTL2, NCOA1, MAFK, BCL11A, REST, ATF7, TRP47, FOXA2, MTA3, CREM, CHD2, MEIS1, MAFF, FOXF1, MEF2C, HOXB13, ZKSCAN1, ZNF318, KDM1A, CREB3L1, RELA, TARDBP, NEUROD1, AHR, ZFP36, HIF1A, OTX2, GATA3, MGA, TAL1, MAX, NRIP1, GATA1, HAND2, CBX2, KLF4, GFI1B, NCOA3, ZNF512, PKNOX1, MYOD1, ELF3, BHLHE40, PAX3-FOXO1, AR, TAF1, EGR1, HSF1, RNF2, BRD4, JUND, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,KCNJ15,ERG,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000157551,
ENSG00000157554,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:34525000-34550000~~chr21:38750000-38775000,
chr21:38250000-38275000~~chr21:38750000-38775000,
chr21:38500000-38525000~~chr21:38750000-38775000,
chr21:38650000-38675000~~chr21:38750000-38775000,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38750000-38775000~~chr21:39375000-39400000,