- Basic information
- CohesinDB ID: CDBP00419289
- Locus: chr21-38780320-38781238
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Data sourse: GSE93080, GSE67783, GSE98367, ENCSR000BSB, GSE138405, GSE129526, GSE111913, GSE101921, ENCSR000BMY, ENCSR000EDE, GSE120943, GSE68388, GSE111537, GSE131606, GSE108869, ENCSR000ECS
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Cell type: Macrophage, HMEC, Hela-Kyoto, HCT-116, Monocytes, GM12878, HeLa-S3, RT-112, OCI-AML-3, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBX5, FOXA1, HDGF, ATF3, NFIC, RUNX3, PRDM1, ZNF429, ATF4, PAX5, CDX2, MAF, KLF5, TEAD1, BCLAF1, TRIM28, KLF6, SNAI2, ESR1, USF2, JUN, TCF12, EP300, MNT, IRF4, RFX5, TRIM24, ZNF280A, TEAD4, GATAD2A, RBPJ, EED, POU2F2, CHD8, CTBP1, MTA2, DUX4, STAT1, SRF, MLLT3, GATAD1, HOXC5, CHD4, NFKB2, MYC, RAD21, GRHL3, PROX1, STAT3, IKZF1, RCOR1, NR3C1, CEBPB, KMT2A, CREB1, SPI1, IRF1, RELB, ETV5, RUNX1, BCL6, AFF4, ZFX, SOX13, SMAD3, ZNF549, MEF2A, ZNF384, PBX4, SMAD4, FOS, CDK8, MED1, ZEB1, TEAD3, TERF1, MYB, SETDB1, SP1, BCL11A, ZHX1, ATF7, PHIP, MLLT1, MEF2B, PPARG, CBX3, EBF1, CREM, KDM1A, YY1, RELA, TARDBP, JUNB, BATF, MAX, ZNF143, KLF4, ZNF141, TCF7L2, TP53, PKNOX1, NFKB1, ELF3, TBX21, AR, ZBTB26, IKZF2, BRD4, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6,GET1,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops