- Basic information
- CohesinDB ID: CDBP00419291
- Locus: chr21-38784001-38785207
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE111913, ENCSR000BLS, ENCSR054FKH, ENCSR703TNG, ENCSR917QNE
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Cell type: MCF-7, Liver, RT-112, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 68%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, POU2F2, CHD8, NCOA3, MYC, ZNF263, CDK6, TRIM28, ZFX, GRHL3, WT1, STAT1, CLOCK, ESR2, SMAD4, ZSCAN22, PHOX2B, XRCC5, SPI1, ERG
- Target gene symbol (double-evidenced CRMs): KCNJ6,GET1-SH3BGR,GET1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops