- Basic information
- CohesinDB ID: CDBP00419300
- Locus: chr21-38828874-38829129
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Data sourse: GSE206145-NatGen2015, GSE131577
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Cell type: Fibroblast, HL-60
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): ETS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157557,
- Related loop:
chr21:37850000-37875000~~chr21:38800000-38825000,
chr21:38150000-38175000~~chr21:38800000-38825000,
chr21:38500000-38525000~~chr21:38800000-38825000,
chr21:38650000-38675000~~chr21:38800000-38825000,
chr21:38800000-38825000~~chr21:38900000-38925000,
chr21:38800000-38825000~~chr21:38950000-38975000,
chr21:38800000-38825000~~chr21:38975000-39000000,
chr21:38800000-38825000~~chr21:39000000-39025000,
chr21:38800000-38825000~~chr21:39025000-39050000,
chr21:38800000-38825000~~chr21:39050000-39075000,
chr21:38800000-38825000~~chr21:39075000-39100000,
chr21:38800000-38825000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39125000-39150000,
chr21:38800000-38825000~~chr21:39175000-39200000,
chr21:38800000-38825000~~chr21:39325000-39350000,
chr21:38800000-38825000~~chr21:39375000-39400000,
chr21:38800000-38825000~~chr21:39425000-39450000,
chr21:38800000-38825000~~chr21:39600000-39625000,
chr21:38823242-38824815~~chr21:39125156-39127107,
chr21:38830399-38833946~~chr21:39124252-39127148,
chr21:38830488-38833913~~chr21:39020753-39024286,
chr21:38830488-38833913~~chr21:39125126-39127076,
chr21:38830586-38832547~~chr21:38861447-38863071,