- Basic information
- CohesinDB ID: CDBP00419302
- Locus: chr21-38834722-38835209
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Data sourse: ENCSR167MTG, ENCSR338DUC, ENCSR230ZWH, GSE72082, GSE86191, GSE76893, ENCSR000BLS, GSE206145, GSE206145-NatGen2015, ENCSR054FKH, GSE25021
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Cell type: RPE, Fibroblast, HCT-116, Hep-G2, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, HMG20A, SOX2, XBP1, FOXA1, RXRB, TFAP4, ZFP64, TEAD1, NFE2L2, RCOR2, ESR1, BAF155, EP300, SOX5, TRIM24, E2F1, RFX3, FOXA3, ZNF175, GATAD2A, TFAP2C, RBPJ, MYCN, ZBTB48, GATAD1, SAP130, ARID3A, ERG, RFX1, HOMEZ, RAD21, APC, ZNF614, XRCC5, NKX3-1, MIER3, NR2F6, MIXL1, TFE3, HDAC2, GATA2, ZNF644, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, BCL6, SMC1A, CEBPA, SOX13, SIN3A, ZFX, TET2, SP5, RARA, ZNF384, ZNF48, SMAD4, TGIF2, MED1, TEAD3, PIAS1, RBM22, HNF4A, IKZF5, ASH2L, FOXP1, STAG1, FOXA2, WT1, HOXB13, ZNF580, KDM1A, RELA, SP140, GATA3, ZNF519, CEBPG, NR2F1, PHF5A, ELF3, KAT8, NFKBIZ, ARID4B, AR, ZBTB26, ZNF248, JUND, SCRT1, CUX1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops