- Basic information
- CohesinDB ID: CDBP00419322
- Locus: chr21-38881074-38881602
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Data sourse: ENCSR748MVX, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, A-549
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 63%,
"9_Het": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: THAP11, FOXO1, PGR, FOXA2, CEBPA, HMG20A, LDB1, SOX13, STAT1, FOXA1, HLF, FOXF1, RXRB, KDM1A, YY1, RELA, RARA, HOXC5, ATF3, ZNF626, ZNF280A, ZNF510, GATA4, RAD21, GRHL3, PBX4, DAXX, RXRA, GATA3, SMAD4, GABPA, STAT3, MAX, IKZF1, NR2F6, NR3C1, ESRRA, CEBPB, NCOA3, NR2F2, TRIM28, CEBPG, TEAD3, NR2F1, PIAS1, TP53, SETDB1, MYOD1, PHOX2B, SP1, EP300, SPI1, HNF4A, AR, IRF1, SOX5, REST, GATA2, JUND, BRD4, FOXP1, ZNF350, NFIL3, ZIM3, FOXA3, GATAD2A, FOSL2
- Target gene symbol (double-evidenced CRMs): PSMG1,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops