- Basic information
- CohesinDB ID: CDBP00419324
- Locus: chr21-38888790-38889935
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Data sourse: GSE206145-NatGen2015, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PPARG, SOX2, SS18, FOXA1, HOXB13, YY1, RELA, ZNF384, NEUROD1, RAD21, GRHL3, SOX11, OTX2, GATA3, ATF2, MED1, NR3C1, CEBPB, ESR1, GRHL2, SP1, BAF155, AR, BRD4
- Target gene symbol (double-evidenced CRMs): ERG,PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops