- Basic information
- CohesinDB ID: CDBP00419331
- Locus: chr21-38927606-38928109
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Data sourse: ENCSR000BTU, GSE67783, GSE86191, GSE206145-NatGen2015, GSE120943
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Cell type: Fibroblast, HCT-116, Monocytes, Ishikawa, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, ZNF283, CEBPA, ZSCAN5D, MYCN, ZFX, TEAD4, POU4F2, DUX4, ZSCAN5A, STAT1, ERG, RELA, CREBBP, NOTCH1, ZNF90, AHR, NFIC, CDK6, MYC, RAD21, GRHL3, HIF1A, GATA3, GABPA, TAL1, NFE2, CEBPB, TRIM28, KMT2A, MYB, SNAI2, ZNF334, CTCF, TCF12, USF1, BCL11A, JUN, SPI1, LMO1, AR, HNF4A, MXD3, BRD4, AFF1, TCF3, MAZ, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): GET1,ERG,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:38450000-38475000~~chr21:38900000-38925000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38575000-38600000~~chr21:38925000-38950000,
chr21:38725000-38750000~~chr21:38900000-38925000,
chr21:38800000-38825000~~chr21:38900000-38925000,
chr21:38900000-38925000~~chr21:39000000-39025000,
chr21:38900000-38925000~~chr21:39025000-39050000,
chr21:38900000-38925000~~chr21:39050000-39075000,
chr21:38900000-38925000~~chr21:39075000-39100000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38900000-38925000~~chr21:39375000-39400000,
chr21:38925000-38950000~~chr21:39025000-39050000,
chr21:38925000-38950000~~chr21:39050000-39075000,
chr21:38925000-38950000~~chr21:39100000-39125000,
chr21:38925000-38950000~~chr21:39125000-39150000,
chr21:38925000-38950000~~chr21:39375000-39400000,