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Basic information

CohesinDB ID: CDBP00419332

Locus: chr21-38929045-38929452

Data sourse: GSE120943, GSE67783, GSE86191, GSE98367

Cell type: Monocytes, HCT-116, HSPC, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 96% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 47%, "5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, ZNF283, CEBPA, ZSCAN5D, MYCN, ZFX, TEAD4, POU4F2, DUX4, ZSCAN5A, STAT1, ERG, RELA, CREBBP, NOTCH1, ZNF90, AHR, NFIC, CDK6, MYC, RAD21, GRHL3, HIF1A, GATA3, GABPA, TAL1, NFE2, CEBPB, TRIM28, KMT2A, MYB, SNAI2, ZNF334, CTCF, TCF12, USF1, BCL11A, JUN, SPI1, LMO1, AR, HNF4A, MXD3, BRD4, AFF1, TCF3, MAZ, SMC3, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): GET1,ERG,GET1-SH3BGR

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000157554, ENSG00000285815, ENSG00000182093,

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Deatailed information for cohesin site CDBP00419332