- Basic information
- CohesinDB ID: CDBP00419365
- Locus: chr21-39020597-39024249
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, ENCSR501LQA, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE121355, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, GSE143937, GSE165895, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE152721, GSE206145-NatGen2015, GSE120943, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE98367, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ENCSR247LSH, GSE206145, ENCSR000EHX, ENCSR635OSG, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR853VWZ, GSE55407, GSE110061, GSE129526, ENCSR000HPG, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR537EFT, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
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Cell type: RH4, GM2610, SLK, CVB-hiPSC, HSPC, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HEKn, Ishikawa, HeLa-S3, IMR-90, K-562, GM18486, DKO, HFFc6, H1-hESC, Monocytes, GM18505, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, THP-1, Macrophage, HUES64, MCF-7, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, GM19238, HeLa, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 39% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.533
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 36%,
"15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, TRIM25, HMG20A, SOX2, HNF1A, XBP1, FOXA1, HLF, SUZ12, RBFOX2, RXRB, PBX2, MLL4, ZFHX2, KDM3A, TFAP4, TSC22D4, LYL1, THRB, ATF3, NFIC, ZFP64, RUNX3, CHD7, ZNF444, CBFB, MXD4, MECOM, PAX5, TP63, JMJD1C, MYOG, KLF5, TEAD1, TRIM28, BCLAF1, KLF6, RBM39, ELF1, KLF10, LMO2, ESR1, RCOR2, NFE2L2, SNAI2, USF2, JUN, TCF12, CTCF, EP300, KLF1, E4F1, MNT, SOX9, SOX5, DPF2, PAX8, SOX4, DMAP1, RYBP, TRIM24, IRF4, E2F6, DEK, E2F4, E2F1, ZNF528, SMC1, RFX3, TEAD4, KMT2B, FOXA3, ZNF175, GATAD2A, GTF2F1, RBPJ, EED, MLX, TFAP2C, POU2F2, CHD8, BRD1, MYCN, POU5F1, RUNX1T1, KDM4C, BRD3, CTBP1, MTA2, ZBTB48, STAT1, SRF, GATAD1, SAP130, ERG2, TBP, HNF4G, ERG, PBX1, ASCL1, OGG1, ETS1, MYC, SMARCA4, KDM4A, HOMEZ, RAD21, FOXP2, GRHL3, RXRA, GABPA, APC, ZNF614, XRCC5, STAT3, IKZF1, NFE2, MIER3, NR2F6, RCOR1, VDR, NR3C1, CEBPB, SRSF3, ZNF750, HNRNPL, ESRRA, KMT2A, CREB1, TBL1XR1, EZH2, GRHL2, ZNF652, EBF3, GABPB1, ZHX2, SPI1, TFE3, MIXL1, HBP1, PCBP1, HDAC2, GATA2, ZNF182, ZNF644, GATAD2B, MXD3, SIX2, FLI1, DRAP1, ZGPAT, HCFC1, SMARCA5, NFIL3, ZIM3, MYF5, ETV5, PTBP1, RUNX1, THAP11, SMC1A, BCL6, CEBPA, MTA3, CBX1, SOX13, ZFX, SIN3A, FIP1L1, AFF4, SMAD3, PCBP2, ZNF770, TET2, TBX3, SP5, ERG3, TRIM22, TWIST1, SMARCC1, MYBL2, RARA, NFYC, NOTCH1, ZBTB2, TAF15, RUNX2, CDK6, GATA4, RBBP5, PBX4, ARNT, NRF1, ZNF48, PRDM9, SMAD4, ZEB2, ETV6, MAFB, FOXM1, FOS, CDK8, HMGXB4, SMARCB1, CHD1, MED1, TEAD3, CEBPD, MYB, KDM6B, ZMYM3, U2AF1, NR1H2, L3MBTL2, EVI1, HIF2A, STAT5A, TBX5, SREBF2, USF1, BCL11A, SP1, NIPBL, NR4A1, HNF4A, IKZF5, REST, ZBTB7A, ARID1A, RBM25, ZNF479, ZHX1, ASH2L, HNRNPLL, TCF3, FOXP1, AATF, SMC3, ELL2, MLLT1, STAG1, ETV4, NFATC3, SKI, STAG2, TRP47, CBFA2T2, PPARG, AGO1, FOXA2, EBF1, CREM, SS18, CHD2, ZNF600, MIER2, GTF2B, WT1, MAFF, ESR2, MEF2C, TCF7, CDK9, ZNF580, HOXB13, FOXO3, KDM1A, YY1, RELA, ZKSCAN1, JUNB, SP140, TCF4, HIF1A, ZFP36, BHLHE22, GATA3, BATF, TAL1, MAX, MAF1, SPIB, GATA1, AGO2, ZNF143, PLAG1, CBX2, CEBPG, BCL11B, KLF4, GFI1B, NR2F2, NR2F1, TCF7L2, KDM5B, NEUROG2, TP53, MED, ZNF334, NFKB1, MYOD1, EGR2, ELF3, PHF5A, KAT8, T, TBX21, NFKBIZ, AR, BHLHE40, ARID4B, ZBTB16, TAF1, YAP1, EGLN2, EGR1, ZBTB26, RNF2, IKZF2, BRD4, HSF1, JUND, ILF3, CUX1, MAZ, SMAD4.1D12, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): PSMG1,LCA5L,SH3BGR,GET1-SH3BGR,GET1,ERG,ETS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 23
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
- Related loop:
chr21:38450000-38475000~~chr21:39000000-39025000,
chr21:38575000-38600000~~chr21:39000000-39025000,
chr21:38650000-38675000~~chr21:39000000-39025000,
chr21:38733115-38735253~~chr21:39022229-39023588,
chr21:38733127-38735189~~chr21:39020330-39024316,
chr21:38733295-38735171~~chr21:39022214-39024026,
chr21:38800000-38825000~~chr21:39000000-39025000,
chr21:38800000-38825000~~chr21:39025000-39050000,
chr21:38804148-38807306~~chr21:39022163-39023870,
chr21:38804397-38807388~~chr21:39020330-39024316,
chr21:38830488-38833913~~chr21:39020753-39024286,
chr21:38875000-38900000~~chr21:39025000-39050000,
chr21:38897047-38898311~~chr21:39016372-39018255,
chr21:38900000-38925000~~chr21:39000000-39025000,
chr21:38900000-38925000~~chr21:39025000-39050000,
chr21:38925000-38950000~~chr21:39025000-39050000,
chr21:39000000-39025000~~chr21:39150000-39175000,
chr21:39000000-39025000~~chr21:39375000-39400000,
chr21:39000000-39025000~~chr21:39425000-39450000,
chr21:39020753-39024286~~chr21:39046917-39049378,