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Basic information

CohesinDB ID: CDBP00419367

Locus: chr21-39027861-39028086

Data sourse: GSE110061, GSE108869

Cell type: HeLa-S3, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 96% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 42%, "9_Het": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, SUZ12, RING1B, TFAP4, ATF3, NFIC, ZC3H8, CHD7, DPF1, SMARCE1, ZNF287, TEAD1, TRIM28, ETV1, ZNF217, ESR1, OCA2, PITX3, USF2, CTCF, TCF12, ZNF507, EP300, MNT, GATA6, DPF2, RYBP, E2F6, RAD51, ZNF280A, TEAD4, GTF2F1, PDX1, TFAP2C, NANOG, BRD1, ZSCAN5D, MYCN, POU5F1, CTBP1, ZBTB17, ZBTB48, ZSCAN5A, STAT1, SP4, ERG, MYC, RAD21, RXRA, GABPA, STAT3, RCOR1, NR2F6, NR3C1, CEBPB, CREB1, GRHL2, EBF3, HDAC2, GATA2, GATAD2B, FLI1, SREBF1, NCOA2, ETV5, CBX1, CEBPA, SIN3A, ZFX, SMAD3, TWIST1, SMARCC1, CREBBP, RARA, SMAD2, GATA4, PBX4, SOX11, ATF2, SMAD4, PBX3, FOXM1, MED1, TEAD3, ZEB1, ZMYM3, NR1H2, SETDB1, TBX5, USF1, SP1, TFAP2A, HNF4A, NKX2-5, REST, ZNF479, ZBTB7A, RBM25, ASH2L, CTBP2, BCOR, SMC3, STAG1, MLLT1, FOXA2, RBBP5, CHD2, SS18, MIER2, WT1, KDM1A, YY1, RELA, ISL1, SP140, ZFP36, HIF1A, PCGF1, TCF4, MCM3, GATA3, MAX, NRIP1, GATA1, ZNF143, MTA1, HAND2, NR2F2, NR2F1, TP53, PKNOX1, ZNF687, ZFP28, AR, TAF1, ZNF579, YAP1, EGR1, BRD4, JUND, MAZ, AHR

Target gene symbol (double-evidenced CRMs): ETS2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157557,

eachgene

Deatailed information for cohesin site CDBP00419367