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Basic information

CohesinDB ID: CDBP00419390

Locus: chr21-39079018-39081868

Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE111537, GSE25021, ENCSR000EDW, ENCSR917QNE, GSE67783, GSE86191, GSE206145-NatGen2015, GSE120943, ENCSR703TNG, ENCSR338DUC, GSE98367, ENCSR000BLS, GSE206145, ENCSR000EHX, GSE55407, ENCSR167MTG, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE68388, GSE83726, GSE126755

Cell type: MCF-7, H1-hESC, Macrophage, Fibroblast, HCT-116, Monocytes, Hep-G2, RH4, RPE, THP-1, OCI-AML-3, RT-112, SK-N-SH, K-562, Liver, Neutrophil, HSPC, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 8% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.800

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 96% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 42%, "14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, NFIA, PGR, HMG20A, XBP1, FOXA1, HLF, RXRB, ZFHX2, KDM3A, TFAP4, TSC22D4, LYL1, ATF3, CHD7, PRDM1, MECOM, PAX5, JMJD1C, TEAD1, TRIM28, ELF1, LMO2, ESR1, MLL, RCOR2, CTCF, TCF12, EP300, SOX5, E2F6, DMAP1, TRIM24, IRF4, E2F4, KMT2B, FOXA3, ZNF175, GATAD2A, TFAP2C, RBPJ, CHD8, ZSCAN5D, POU5F1, MYCN, TOP2A, ZBTB48, STAT1, GATAD1, SAP130, ERG2, HNF4G, ERG, ETS1, MYC, ONECUT1, SMARCA4, HOMEZ, RAD21, GRHL3, RXRA, GABPA, STAT3, XRCC5, ZNF614, RCOR1, NFE2, NR2F6, MIER3, VDR, ZNF750, CEBPB, NR3C1, KMT2A, CREB1, EZH2, ZNF652, GABPB1, ZHX2, SPI1, TFE3, MIXL1, IRF1, HDAC2, GATA2, INTS13, ZNF644, FLI1, DRAP1, ZGPAT, NFIL3, ATF1, PTBP1, ETV5, RUNX1, THAP11, SMC1A, BCL6, CEBPA, CBX1, SOX13, ZFX, PCBP2, TET2, CBX8, ERG3, SP5, RARA, PRPF4, CDK6, ARNT, SMAD4, FOS, CDK8, MED1, TEAD3, CEBPD, MYB, PIAS1, ZMYM3, MBD1, STAT5A, SP1, BCL11A, HNF4A, IKZF5, REST, RBM25, ASH2L, BCOR, TCF3, FOXP1, SMC3, MLLT1, STAG1, SKI, CBFA2T2, PPARG, FOXA2, CREM, MIER2, ZSCAN16, WT1, MEF2C, ZBTB33, CDK9, HOXB13, ZNF580, KDM1A, YY1, RELA, SP140, ZFP36, TCF4, HIF1A, BHLHE22, TAL1, MAX, ZNF143, CEBPG, NR2F2, NR2F1, KDM5B, ZBTB6, EGR2, ELF3, PHF5A, KAT8, NFKBIZ, AR, ARID4B, RXR, EGR1, HSF1, NCOR1, ZBTB26, BRD4, SCRT1, JUND, MAZ, AHR

Target gene symbol (double-evidenced CRMs): ETS2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 17

Related genes and loops

Related gene: ENSG00000157557,

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Deatailed information for cohesin site CDBP00419390