- Basic information
- CohesinDB ID: CDBP00419396
- Locus: chr21-39102151-39102227
-
Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 63%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NANOG, NME2
- Target gene symbol (double-evidenced CRMs): ERG,ETS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
- Related loop:
chr21:17425000-17450000~~chr21:39075000-39100000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38450000-38475000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38700000-38725000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39075000-39100000,
chr21:38800000-38825000~~chr21:39100000-39125000,
chr21:38850000-38875000~~chr21:39100000-39125000,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38900000-38925000~~chr21:39075000-39100000,
chr21:38925000-38950000~~chr21:39100000-39125000,
chr21:38950000-38975000~~chr21:39100000-39125000,
chr21:39100000-39125000~~chr21:39700000-39725000,