- Basic information
- CohesinDB ID: CDBP00419401
- Locus: chr21-39118015-39120208
-
Data sourse: GSE67783, ENCSR230ZWH, GSE86191, GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast, HCT-116, Liver, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 53%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, JARID2, TRP47, POU2F2, CHD8, ZNF316, BRD1, MYCN, POU5F1, SIRT6, ZSCAN5D, ZFX, WT1, ZBTB48, ZSCAN5A, TET2, ERG3, ZFHX2, YY1, RELA, TARDBP, OGG1, ATF3, MYC, SP140, GRHL3, HIF1A, ATF4, STAT3, GATA1, RCOR1, DNMT3B, CEBPG, CEBPB, ZNF750, SRSF3, KLF4, TRIM28, RBM39, NR2F1, EZH2, STAG1, ESR1, OCA2, GRHL2, ZNF334, EGR2, CTCF, JUN, KLF1, AR, EGR1, HSF1, MAZ, AATF, SMC3, ZNF24, ETV5, AHR
- Target gene symbol (double-evidenced CRMs): ETS2,ERG
- Function elements
- Human SNPs: Daytime_sleep_phenotypes
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000157554,
ENSG00000157557,
- Related loop:
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38350000-38375000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38450000-38475000~~chr21:39100000-39125000,
chr21:38450000-38475000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475839-38477375~~chr21:39125156-39127107,
chr21:38498759-38500180~~chr21:39125156-39127107,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38668443-38670408~~chr21:39125161-39127119,
chr21:38668618-38670577~~chr21:39125156-39127107,
chr21:38675000-38700000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39100000-39125000,
chr21:38700000-38725000~~chr21:39125000-39150000,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38732441-38735255~~chr21:39124252-39127148,
chr21:38732695-38735241~~chr21:39125188-39128467,
chr21:38732707-38735284~~chr21:39125195-39128459,
chr21:38732732-38735278~~chr21:39125141-39127110,
chr21:38732774-38735251~~chr21:39125169-39127059,
chr21:38732781-38735273~~chr21:39125163-39127081,
chr21:38732867-38735207~~chr21:39125201-39127072,
chr21:38732878-38735149~~chr21:39125097-39127121,
chr21:38732907-38735171~~chr21:39125144-39128433,
chr21:38732912-38735244~~chr21:39125068-39127102,
chr21:38732913-38735227~~chr21:39125178-39127111,
chr21:38732918-38735320~~chr21:39125161-39127119,
chr21:38732922-38735240~~chr21:39120293-39121764,
chr21:38732922-38735240~~chr21:39125151-39127099,
chr21:38733040-38735256~~chr21:39125142-39127123,
chr21:38733109-38735129~~chr21:39114383-39115550,
chr21:38733115-38735333~~chr21:39125098-39127101,
chr21:38733127-38735189~~chr21:39125161-39127067,
chr21:38733295-38735171~~chr21:39125184-39128368,
chr21:38733299-38735274~~chr21:39125124-39127062,
chr21:38733311-38735294~~chr21:39125156-39127107,
chr21:38733315-38735206~~chr21:39125126-39127076,
chr21:38733333-38735287~~chr21:39125164-39127080,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39125000-39150000,
chr21:38804025-38807695~~chr21:39125068-39127102,
chr21:38804026-38806194~~chr21:39120537-39121759,
chr21:38804033-38807696~~chr21:39124252-39127148,
chr21:38804047-38805972~~chr21:39125144-39128433,
chr21:38804058-38806494~~chr21:39125159-39127061,
chr21:38804079-38807181~~chr21:39125184-39128368,
chr21:38804094-38806437~~chr21:39120295-39121683,
chr21:38804094-38806437~~chr21:39125164-39127080,
chr21:38804103-38806461~~chr21:39125098-39127101,
chr21:38804112-38806553~~chr21:39125142-39127123,
chr21:38804148-38807306~~chr21:39125161-39127119,
chr21:38804159-38806544~~chr21:39120293-39121764,
chr21:38804159-38806544~~chr21:39125151-39127099,
chr21:38804159-38806607~~chr21:39125163-39127081,
chr21:38804213-38806093~~chr21:39125156-39127107,
chr21:38804345-38806440~~chr21:39125177-39127057,
chr21:38804397-38807388~~chr21:39125161-39127067,
chr21:38810787-38812114~~chr21:39125156-39127107,
chr21:38818748-38820756~~chr21:39125161-39127067,
chr21:38823242-38824815~~chr21:39125156-39127107,
chr21:38830399-38833946~~chr21:39124252-39127148,
chr21:38830488-38833913~~chr21:39125126-39127076,
chr21:38850000-38875000~~chr21:39100000-39125000,
chr21:38852714-38854659~~chr21:39125156-39127107,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38925000-38950000~~chr21:39100000-39125000,
chr21:38925000-38950000~~chr21:39125000-39150000,
chr21:38950000-38975000~~chr21:39100000-39125000,
chr21:38950000-38975000~~chr21:39125000-39150000,
chr21:39100000-39125000~~chr21:39700000-39725000,