- Basic information
- CohesinDB ID: CDBP00419402
- Locus: chr21-39120833-39129703
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE168045, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, TC-71, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, SC, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 82% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.133
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 44%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, TRIM25, FOSL1, XBP1, SNAPC4, FOXA1, ATF3, CBFB, TP63, ZNF736, MAF, ETV1, ESR1, TP73, CTCF, JUN, CHD8, MYCN, ZNF263, POU5F1, KDM4C, ZBTB48, ERG, ETS1, MYC, RAD21, GRHL3, NKX2-1, APC, STAT3, NR3C1, CEBPB, HNRNPL, EZH2, ZHX2, GATA2, RUNX1, SMC1A, ZFX, SMAD3, TET2, CBX8, ZBTB2, PRPF4, NOTCH1, RUNX2, PBX4, DAXX, PRDM9, FOS, CDK8, MED1, TEAD3, MYB, SCRT2, EVI1, USF1, BCL11A, REST, TCF3, SMC3, STAG1, TRP47, CBFA2T2, WT1, ESR2, YY1, RELA, SP140, ZIC2, GATA3, GATA1, ZNF143, PLAG1, NR2F1, TP53, ZNF334, NFKB1, T, AR, HSF1, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): ERG,KCNJ6,ETS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 38
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000157557,
- Related loop:
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38350000-38375000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38450000-38475000~~chr21:39100000-39125000,
chr21:38450000-38475000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475839-38477375~~chr21:39125156-39127107,
chr21:38498759-38500180~~chr21:39125156-39127107,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38505153-38506875~~chr21:39125458-39126872,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38668443-38670408~~chr21:39125161-39127119,
chr21:38668618-38670577~~chr21:39125156-39127107,
chr21:38668690-38670119~~chr21:39125458-39126872,
chr21:38675000-38700000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39100000-39125000,
chr21:38700000-38725000~~chr21:39125000-39150000,
chr21:38711440-38713239~~chr21:39125215-39127084,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38732441-38735255~~chr21:39124252-39127148,
chr21:38732695-38735241~~chr21:39125188-39128467,
chr21:38732707-38735284~~chr21:39125195-39128459,
chr21:38732732-38735278~~chr21:39125141-39127110,
chr21:38732755-38735268~~chr21:39127096-39128415,
chr21:38732774-38735251~~chr21:39125169-39127059,
chr21:38732781-38735273~~chr21:39125163-39127081,
chr21:38732867-38735207~~chr21:39125201-39127072,
chr21:38732878-38735149~~chr21:39125097-39127121,
chr21:38732907-38735171~~chr21:39125144-39128433,
chr21:38732910-38735120~~chr21:39125317-39127099,
chr21:38732912-38735244~~chr21:39125068-39127102,
chr21:38732913-38735227~~chr21:39125178-39127111,
chr21:38732918-38735320~~chr21:39125161-39127119,
chr21:38732922-38735240~~chr21:39120293-39121764,
chr21:38732922-38735240~~chr21:39125151-39127099,
chr21:38733040-38735256~~chr21:39125142-39127123,
chr21:38733109-38735129~~chr21:39125260-39127025,
chr21:38733112-38735280~~chr21:39125212-39128459,
chr21:38733113-38735237~~chr21:39125254-39127058,
chr21:38733115-38735253~~chr21:39125310-39127084,
chr21:38733115-38735333~~chr21:39125098-39127101,
chr21:38733120-38735170~~chr21:39125209-39127143,
chr21:38733127-38735156~~chr21:39125374-39126978,
chr21:38733127-38735189~~chr21:39125161-39127067,
chr21:38733143-38735119~~chr21:39125217-39127141,
chr21:38733149-38735253~~chr21:39125305-39127127,
chr21:38733295-38735171~~chr21:39125184-39128368,
chr21:38733299-38735274~~chr21:39125124-39127062,
chr21:38733311-38735294~~chr21:39125156-39127107,
chr21:38733315-38735206~~chr21:39125126-39127076,
chr21:38733333-38735287~~chr21:39125164-39127080,
chr21:38733333-38735287~~chr21:39127128-39128385,
chr21:38733340-38735147~~chr21:39125392-39126982,
chr21:38733341-38735220~~chr21:39125246-39127033,
chr21:38733350-38735147~~chr21:39125287-39127030,
chr21:38733363-38735045~~chr21:39125243-39126927,
chr21:38733388-38735159~~chr21:39125429-39126867,
chr21:38733388-38735372~~chr21:39125407-39126885,
chr21:38733389-38735343~~chr21:39125458-39126872,
chr21:38733445-38735107~~chr21:39125220-39127056,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39125000-39150000,
chr21:38803978-38806088~~chr21:39125286-39127099,
chr21:38804025-38807695~~chr21:39125068-39127102,
chr21:38804026-38806194~~chr21:39120537-39121759,
chr21:38804026-38806194~~chr21:39125246-39127033,
chr21:38804033-38807696~~chr21:39124252-39127148,
chr21:38804047-38805972~~chr21:39125144-39128433,
chr21:38804058-38806494~~chr21:39125159-39127061,
chr21:38804079-38807181~~chr21:39125184-39128368,
chr21:38804094-38806437~~chr21:39120295-39121683,
chr21:38804094-38806437~~chr21:39125164-39127080,
chr21:38804103-38806461~~chr21:39125098-39127101,
chr21:38804112-38806553~~chr21:39125142-39127123,
chr21:38804148-38807306~~chr21:39125161-39127119,
chr21:38804159-38806544~~chr21:39120293-39121764,
chr21:38804159-38806544~~chr21:39125151-39127099,
chr21:38804159-38806607~~chr21:39125163-39127081,
chr21:38804213-38806093~~chr21:39125156-39127107,
chr21:38804345-38806440~~chr21:39125177-39127057,
chr21:38804397-38807388~~chr21:39125161-39127067,
chr21:38804458-38807167~~chr21:39125310-39127084,
chr21:38810787-38812114~~chr21:39125156-39127107,
chr21:38818748-38820756~~chr21:39125161-39127067,
chr21:38823242-38824815~~chr21:39125156-39127107,
chr21:38830399-38833946~~chr21:39124252-39127148,
chr21:38830488-38833913~~chr21:39125126-39127076,
chr21:38850000-38875000~~chr21:39100000-39125000,
chr21:38852714-38854659~~chr21:39125156-39127107,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38925000-38950000~~chr21:39100000-39125000,
chr21:38925000-38950000~~chr21:39125000-39150000,
chr21:38950000-38975000~~chr21:39100000-39125000,
chr21:38950000-38975000~~chr21:39125000-39150000,
chr21:39061365-39062529~~chr21:39125341-39127059,
chr21:39100000-39125000~~chr21:39700000-39725000,