- Basic information
- CohesinDB ID: CDBP00419406
- Locus: chr21-39151590-39151880
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, POU5F1, MYCN, ZFX, XBP1, WT1, DUX4, FOXA1, HLF, SUZ12, PBX2, HNF4G, RELA, ATF3, MYC, SMARCA4, RAD21, SP140, PBX4, TCF4, GRHL3, ATF4, ARNT, TAL1, PAX5, ZNF449, CDX2, CBX2, CEBPG, CEBPB, MYOG, TEAD1, ZNF573, CREB1, SNAI2, NCOA1, HDAC8, ZNF334, CTCF, SPI1, HNF4A, AR, ZNF257, FLI1, ZNF548, BRD4, SMC3, STAG1, AHR, EED
- Target gene symbol (double-evidenced CRMs): GET1,KCNJ6,ERG,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000285815,
ENSG00000182093,
- Related loop:
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39150000-39175000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38350000-38375000~~chr21:39125000-39150000,
chr21:38350000-38375000~~chr21:39150000-39175000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39150000-39175000,
chr21:38379946-38381381~~chr21:39152646-39154555,
chr21:38450000-38475000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38504701-38506502~~chr21:39152806-39154190,
chr21:38504928-38507061~~chr21:39152794-39154209,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38525000-38550000~~chr21:39150000-39175000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39150000-39175000,
chr21:38675000-38700000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39150000-39175000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38725000-38750000~~chr21:39150000-39175000,
chr21:38732441-38735255~~chr21:39152908-39154177,
chr21:38800000-38825000~~chr21:39125000-39150000,
chr21:38850000-38875000~~chr21:39150000-39175000,
chr21:38875000-38900000~~chr21:39150000-39175000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38925000-38950000~~chr21:39125000-39150000,
chr21:38950000-38975000~~chr21:39125000-39150000,
chr21:39000000-39025000~~chr21:39150000-39175000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39700000-39725000,
chr21:39152734-39154644~~chr21:39445170-39446634,