Browse_each

Basic information

CohesinDB ID: CDBP00419408

Locus: chr21-39156042-39156407

Data sourse: GSE138405, GSE206145

Cell type: RPE, Hela-Kyoto

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 96% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 79%, "14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, CREBBP, MED1, NR3C1, CTNNB1, NCOA3, TERF1, RUNX2, POU5F1, MYC, ZFX, GRHL3, HIF1A, MORC2, NFKB1, XRCC5, CDK8

Target gene symbol (double-evidenced CRMs): GET1,KCNJ6,GET1-SH3BGR,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157554, ENSG00000285815, ENSG00000182093,

eachgene

Deatailed information for cohesin site CDBP00419408