- Basic information
- CohesinDB ID: CDBP00419415
- Locus: chr21-39178845-39179222
-
Data sourse: ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 49%,
"5_TxWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, NFIA, USF1, NFIC, TRIM28, SNAI2, ZFX, PRDM1, NFIB, NOTCH3, BRD4, FOXP1, RBFOX2, CTCF, RBM22, GATA1, ZNF316
- Target gene symbol (double-evidenced CRMs): ERG,GET1,BRWD1,LCA5L,PSMG1,HMGN1,SH3BGR,KCNJ6,GET1-SH3BGR,ETS2,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
ENSG00000185658,
ENSG00000205581,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:25725000-25750000~~chr21:39175000-39200000,
chr21:29050000-29075000~~chr21:39175000-39200000,
chr21:31650000-31675000~~chr21:39175000-39200000,
chr21:31675000-31700000~~chr21:39175000-39200000,
chr21:34350000-34375000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36300000-36325000~~chr21:39175000-39200000,
chr21:37675000-37700000~~chr21:39150000-39175000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:37850000-37875000~~chr21:39175000-39200000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38350000-38375000~~chr21:39150000-39175000,
chr21:38355322-38357346~~chr21:39174194-39176266,
chr21:38375000-38400000~~chr21:39150000-39175000,
chr21:38379619-38381509~~chr21:39174528-39176139,
chr21:38388533-38390282~~chr21:39174059-39176516,
chr21:38475000-38500000~~chr21:39150000-39175000,
chr21:38494233-38495488~~chr21:39174059-39176516,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38504661-38506972~~chr21:39174299-39176494,
chr21:38504693-38507356~~chr21:39174059-39176516,
chr21:38504694-38507025~~chr21:39174543-39176122,
chr21:38504745-38506938~~chr21:39174194-39176266,
chr21:38504928-38507061~~chr21:39174538-39176142,
chr21:38505153-38506875~~chr21:39174680-39176016,
chr21:38525000-38550000~~chr21:39150000-39175000,
chr21:38650000-38675000~~chr21:39150000-39175000,
chr21:38668443-38670408~~chr21:39174561-39176567,
chr21:38668612-38670314~~chr21:39174250-39176317,
chr21:38668668-38670175~~chr21:39174586-39175835,
chr21:38698689-38700039~~chr21:39174554-39176142,
chr21:38700000-38725000~~chr21:39150000-39175000,
chr21:38725000-38750000~~chr21:39150000-39175000,
chr21:38732732-38735278~~chr21:39174250-39176317,
chr21:38732781-38735273~~chr21:39174254-39176512,
chr21:38733112-38735280~~chr21:39174255-39176521,
chr21:38800000-38825000~~chr21:39175000-39200000,
chr21:38810787-38812114~~chr21:39174059-39176516,
chr21:38850000-38875000~~chr21:39150000-39175000,
chr21:38875000-38900000~~chr21:39150000-39175000,
chr21:39000000-39025000~~chr21:39150000-39175000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39700000-39725000,
chr21:39175000-39200000~~chr21:39350000-39375000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39625000-39650000,
chr21:39175000-39200000~~chr21:39650000-39675000,
chr21:39175000-39200000~~chr21:41350000-41375000,
chr21:39175000-39200000~~chr21:41625000-41650000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,