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Basic information

CohesinDB ID: CDBP00419420

Locus: chr21-39204248-39204463

Data sourse: GSE110061, GSE108869

Cell type: HeLa-S3, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 96% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 53%, "4_Tx": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, PGR, ZBTB48, FOXA1, SRF, ARID3A, LEO1, HOXB13, ERG, GLYR1, TP63, NKX3-1, SUPT5H, TLE3, CEBPG, CEBPB, NR3C1, CEBPD, PIAS1, ZNF3, CTCF, RBM22, BCL11A, BAF155, AR, GATA2, BRD4, MAZ, RBPJ

Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,GET1,LCA5L,SH3BGR,BRWD1,B3GALT5

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000185658, ENSG00000285815, ENSG00000182093, ENSG00000157578, ENSG00000185437, ENSG00000183778,

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Deatailed information for cohesin site CDBP00419420