- Basic information
- CohesinDB ID: CDBP00419422
- Locus: chr21-39208500-39209259
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Data sourse: GSE50893, ENCSR153HNT, GSE73207
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Cell type: K-562, TF-1, GM19238, GM19099
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 48%,
"5_TxWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, MEIS2, FOXA1, PBX2, HDGF, ATF3, ZNF362, ATF4, GLYR1, SMARCE1, TEAD1, ZNF121, NFE2L2, ESR1, HDAC8, CTCF, EP300, KLF1, E4F1, MNT, PAX8, DPF2, E2F6, TRIM24, SOX6, E2F4, E2F1, TEAD4, ZNF175, POU5F1, ID3, MTA2, NBN, TBP, SMARCC2, MYC, SMARCA4, ARID1B, GRHL3, FOXK2, GABPA, IKZF1, LEF1, NFE2, ZNF639, RCOR1, CEBPB, KMT2A, CREB1, KLF8, HES1, IRF1, HDAC2, GATA2, NR2C2, SMARCA5, EP400, ATF1, GTF2A2, SMC1A, HDAC1, LDB1, ZFX, ZNF384, ZNF35, NOTCH1, BRD9, ZNF184, ARNT, BACH1, TFDP1, ATF2, PRDM9, ZEB2, NR2C1, SUPT5H, ZXDB, CEBPD, MYB, ZMYM3, TAF7, NCOA1, GTF3C2, L3MBTL2, KLF16, RBM22, BCL11A, NR4A1, REST, ZBTB7A, ATF7, AFF1, BCOR, PRDM6, ILK, MLLT1, ZNF34, NFATC3, CBX3, MTA3, CREM, FOXA2, PAF1, WT1, ZNF318, ZNF589, YY1, RELA, NEUROD1, KAT2B, ZNF148, HIF1A, OTX2, GATA3, MGA, MAX, GATA1, MTA1, ZNF592, NR2F2, NR2F1, PKNOX1, ZBTB40, MYNN, RNF2, NCOR1, JUND, ILF3, BRD4, IRF9, ZZZ3, ZNF24, ADNP
- Target gene symbol (double-evidenced CRMs): B3GALT5,LCA5L,GET1,SH3BGR,BRWD1,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000185658,
ENSG00000285815,
ENSG00000182093,
ENSG00000157578,
ENSG00000185437,
ENSG00000183778,
- Related loop:
chr21:39200000-39225000~~chr21:39300000-39325000,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39600000-39625000,